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Dataset Identifier

Metadata
datasetIdentifierPASS00004
datasetTypeSRM
submitterRuth Hüttenhain <rhuetten>
submitter_organizationIMSB
lab_head_full_nameRuedi Aebersold
lab_head_emailaebersold@imsb.biol.ethz.ch
lab_head_organizationIMSB
lab_head_countrySwitzerland
datasetTagCAP_depleted_plasma
datasetTitleCancer associated proteins depleted plasma
publicReleaseDate2012-05-10 00:00:00
finalizedDate2011-09-21 08:49:50
summaryA list of cancer-associated proteins was targeted in depleted human plasma by label-free SRM. The data was analyzed using mProphet.
contributorsRuth Huettenhain
publicationunpublished
growth
treatmentDepletion of the 14 highest abundant proteins from plasma using MARS HU14
extraction
separationPeptides were separated in 45 minutes by a linear gradient of acetonitrile (5 Ğ 35%) and water, containing 0.1% formic acid at a flow rate of 300 nL min-1.
digestionTrypsin digestion
acquisitionFor target detection in depleted plasma, peptide preparations were analyzed on a TSQ Vantage triple-quadrupole mass spectrometer (Thermo Fisher) in scheduled SRM acquisition mode. SRM acquisition was performed with Q1 and Q3 operated at resolution of 0.7 m/z half maximum peak width, with a retention time window of 240 s and a cycle time of 2.0 s.
informaticsmProphet analysis
instrumentsThermo TSQ Vantage
speciesHuman
massModificationsstatic: C+57.021464

Official URL for this dataset: http://www.peptideatlas.org/PASS/PASS00004
To access files via FTP, use credentials:
Servername: ftp.peptideatlas.org
Username: PASS00004
Password: EQ7277p

Or use your browser's FTP mode: ftp://PASS00004:EQ7277p@ftp.peptideatlas.org/


Listing of files:

 6.4M Sep 21  2011 Cancer_associated_proteins_depleted_plasma_2ndround_01.mzXML
 5.7M Oct  4  2011 Cancer_associated_proteins_depleted_plasma_2ndround_01.raw
  63K Sep 24  2011 Cancer_associated_proteins_depleted_plasma_2ndround_01.xls
 6.5M Sep 21  2011 Cancer_associated_proteins_depleted_plasma_2ndround_02.mzXML
 5.8M Oct  4  2011 Cancer_associated_proteins_depleted_plasma_2ndround_02.raw
  64K Sep 24  2011 Cancer_associated_proteins_depleted_plasma_2ndround_02.xls
 6.5M Sep 21  2011 Cancer_associated_proteins_depleted_plasma_2ndround_03.mzXML
 5.8M Oct  4  2011 Cancer_associated_proteins_depleted_plasma_2ndround_03.raw
  63K Sep 24  2011 Cancer_associated_proteins_depleted_plasma_2ndround_03.xls
 6.5M Sep 21  2011 Cancer_associated_proteins_depleted_plasma_2ndround_04.mzXML
 5.7M Oct  4  2011 Cancer_associated_proteins_depleted_plasma_2ndround_04.raw
  62K Sep 24  2011 Cancer_associated_proteins_depleted_plasma_2ndround_04.xls
 6.5M Sep 21  2011 Cancer_associated_proteins_depleted_plasma_2ndround_05.mzXML
 5.8M Oct  4  2011 Cancer_associated_proteins_depleted_plasma_2ndround_05.raw
  61K Sep 24  2011 Cancer_associated_proteins_depleted_plasma_2ndround_05.xls
 6.5M Sep 21  2011 Cancer_associated_proteins_depleted_plasma_2ndround_06.mzXML
 5.8M Oct  4  2011 Cancer_associated_proteins_depleted_plasma_2ndround_06.raw
  63K Sep 24  2011 Cancer_associated_proteins_depleted_plasma_2ndround_06.xls
 6.5M Sep 21  2011 Cancer_associated_proteins_depleted_plasma_2ndround_07.mzXML
 5.7M Oct  4  2011 Cancer_associated_proteins_depleted_plasma_2ndround_07.raw
  65K Sep 24  2011 Cancer_associated_proteins_depleted_plasma_2ndround_07.xls
 6.4M Sep 21  2011 Cancer_associated_proteins_depleted_plasma_2ndround_08.mzXML
 5.7M Oct  4  2011 Cancer_associated_proteins_depleted_plasma_2ndround_08.raw
  63K Sep 24  2011 Cancer_associated_proteins_depleted_plasma_2ndround_08.xls
 6.3M Sep 21  2011 Cancer_associated_proteins_depleted_plasma_2ndround_09.mzXML
 5.6M Oct  4  2011 Cancer_associated_proteins_depleted_plasma_2ndround_09.raw
  60K Sep 24  2011 Cancer_associated_proteins_depleted_plasma_2ndround_09.xls
 6.4M Sep 21  2011 Cancer_associated_proteins_depleted_plasma_2ndround_10.mzXML
 5.7M Oct  4  2011 Cancer_associated_proteins_depleted_plasma_2ndround_10.raw
  64K Sep 24  2011 Cancer_associated_proteins_depleted_plasma_2ndround_10.xls
 6.4M Sep 21  2011 Cancer_associated_proteins_depleted_plasma_2ndround_11.mzXML
 5.7M Oct  4  2011 Cancer_associated_proteins_depleted_plasma_2ndround_11.raw
  63K Sep 24  2011 Cancer_associated_proteins_depleted_plasma_2ndround_11.xls
 6.4M Sep 21  2011 Cancer_associated_proteins_depleted_plasma_2ndround_12.mzXML
 5.7M Oct  4  2011 Cancer_associated_proteins_depleted_plasma_2ndround_12.raw
  59K Sep 24  2011 Cancer_associated_proteins_depleted_plasma_2ndround_12.xls
 1.1K Sep 24  2011 PASS00004_DESCRIPTION.txt
 517K Sep 30  2011 mProphet_Cancer_associated_proteins_depleted_plasma_2ndround.xls

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