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Dataset Identifier

Metadata
datasetIdentifierPASS00939
datasetTypeSRM
submitterLinda Vuorijoki <lkvuor@utu.fi>
submitter_organizationUniversity of Turku
lab_head_full_nameEva-Mari Aro
lab_head_emailevaaro@utu.fi
lab_head_organizationUniversity of Turku
lab_head_countryFinland
datasetTagIsaR1_SRM
datasetTitleAcclimation of oxygenic photosynthesis to iron starvation is controlled by the sRNA IsaR1 in cyanobacteria
publicReleaseDate2017-03-03 00:00:00
finalizedDate2016-10-18 03:28:09
summaryOxygenic photosynthesis crucially depends on proteins that possess Fe2+ or Fe/S complexes as co-factors or prosthetic groups. Here we show that the regulatory sRNA IsaR1 (Iron-stress activated RNA 1) plays a pivotal role in acclimation to low iron conditions. The IsaR1 regulon consists of more than 15 direct targets, including Fe2+-containing proteins involved in photosynthetic electron transfer, the detoxification of anion radicals, citrate cycle, and in tetrapyrrole biogenesis. IsaR1 is essential to maintain physiological levels of Fe/S cluster biogenesis proteins during iron deprivation. Consequently, IsaR1 affects the acclimation of the photosynthetic apparatus to iron starvation at three levels: (i) directly, via posttranscriptional repression of gene expression and indirectly, (ii) via the suppression of pigment biosynthesis and (iii) Fe/S cluster co-factor. Homologs of IsaR1 are widely conserved throughout the cyanobacterial phylum. We conclude that IsaR1 is a riboregulator of central importance. These findings provide a new perspective for studies of the regulation of iron homeostasis in photosynthetic organisms.
contributorsJens Georg, Gergana Kostova, Linda Vuorijoki, Verena Schön, Taro Kadowaki, Tuomas Huokko, Yagut Allahverdiyeva-Rinne, Yukako Hihara, Matthias E. Futschik, Eva-Mari Aro, Wolfgang R. Hess
publicationGeorg, J. et al., Acclimation of oxygenic photosynthesis to iron starvation is controlled by the sRNA IsaR1 in cyanobacteria, Cell, submitted
growth
treatment
extraction
separation
digestion
acquisition
informatics
instrumentsThermo Scientific TSQ Vantage
speciesSynechocystis sp. PCC 6803
massModificationsStatic: C+57.021464

Official URL for this dataset: http://www.peptideatlas.org/PASS/PASS00939
To access files via FTP, use credentials:
Servername: ftp.peptideatlas.org
Username: PASS00939
Password: ID674qh

Or use your browser's FTP mode: ftp://PASS00939:ID674qh@ftp.peptideatlas.org/


Listing of files:

  11M Oct 18  2016 141030_31_wt_pvz7_0h.raw
  11M Oct 18  2016 141030_32_WT_pvz_7_24h.raw
  11M Oct 18  2016 141030_33_WT_pvz_7_96h.raw
  11M Oct 18  2016 141030_34_WT_pvz_8_0h.raw
  11M Oct 18  2016 141030_35_WT_pvz_8_24h.raw
  11M Oct 18  2016 141030_36_WT_pvz_8_96h.raw
  11M Oct 18  2016 141030_37_WT_pvz_9_0h.raw
  11M Oct 18  2016 141030_38_WT_pvz_9_24h.raw
  11M Oct 18  2016 141030_39_WT_pvz_9_96h.raw
  11M Oct 18  2016 141030_40_IsaR1OE_10_0h.raw
  11M Oct 18  2016 141030_41_IsaR1OE_10_24h.raw
  11M Oct 18  2016 141030_42_IsaR1OE_10_96h.raw
  11M Oct 18  2016 141030_43_IsaR1OE_11_0h.raw
  11M Oct 18  2016 141030_44_IsaR1OE_11_24h.raw
  11M Oct 18  2016 141030_45_IsaR1OE_11_96h.raw
  11M Oct 18  2016 141030_46_IsaR1OE_12_0h.raw
  11M Oct 18  2016 141030_47_IsaR1OE_12_24h.raw
  11M Oct 18  2016 141030_48_IsaR1OE_12_96h.raw
  11M Oct 18  2016 141031_10_WT_2_96h.raw
  11M Oct 18  2016 141031_11_WT_3_0h.raw
  11M Oct 18  2016 141031_12_WT_3_5h.raw
  11M Oct 18  2016 141031_13_WT_3_24h.raw
  11M Oct 18  2016 141031_14_WT_3_48h.raw
  11M Oct 18  2016 141031_15_WT_3_96h.raw
  11M Oct 18  2016 141031_16_dIsaR1_4_0h.raw
  11M Oct 18  2016 141031_17_dIsaR1_4_5h.raw
  11M Oct 18  2016 141031_18_dIsaR1_4_24h.raw
  11M Oct 18  2016 141031_19_dIsaR1_4_48h.raw
  11M Oct 18  2016 141031_1_WT_1_0h.raw
  11M Oct 18  2016 141031_20_dIsaR1_4_96h.raw
  11M Oct 18  2016 141031_21_dIsaR1_5_0h.raw
  11M Oct 18  2016 141031_22_dIsaR1_5_5h.raw
  11M Oct 18  2016 141031_23_dIsaR1_5_24h.raw
  11M Oct 18  2016 141031_24_dIsaR1_5_48h.raw
  11M Oct 18  2016 141031_25_dIsaR1_5_96h.raw
  11M Oct 18  2016 141031_26_dIsaR1_6_0h.raw
  11M Oct 18  2016 141031_27_dIsaR1_6_5h.raw
  11M Oct 18  2016 141031_28_dIsaR1_6_24h.raw
  11M Oct 18  2016 141031_29_dIsaR1_6_48h.raw
  11M Oct 18  2016 141031_2_WT_1_5h.raw
  11M Oct 18  2016 141031_30_dIsaR1_6_96h.raw
  11M Oct 18  2016 141031_3_WT_1_24h.raw
  11M Oct 18  2016 141031_4_WT_1_48h.raw
  11M Oct 18  2016 141031_5_WT_1_96h.raw
  11M Oct 18  2016 141031_6_WT_2_0h.raw
  11M Oct 18  2016 141031_7_WT_2_5h.raw
  11M Oct 18  2016 141031_8_WT_2_24h.raw
  11M Oct 18  2016 141031_9_WT_2_48h.raw
 1.9K Oct 18  2016 PASS00939_DESCRIPTION.txt
  19K Oct 18  2016 TransitionList_PASSEL.csv

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