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Full 2022-02 Build Summary
49experiments
6,322,790PSMs
130,687distinct peptides
3,880canonical proteins

About

The Human Urine PeptideAtlas provides a compendium of results from uniformly reprocessed mass spectrometry proteomics datasets.

Available Human Urine datasets were reprocessed from the raw files using the Trans-Proteomic Pipeline suite of tools.

Explore

SEARCH(e.g. P00747)

Publications

Download

Below are individual Human Urine PeptideAtlas builds available for download in various flat file formats. Note that not all files contain all information from the build. A build subtitled "PSM FDR=0.002" denotes a PSM FDR threshold of 0.002 (0.2%) is applied to every sample in the build.

Human Urine 2022-02 PSM FDR = 0.001Latest Build
  • Biosequence Set in FASTA format [598MB]
  • Database tables exported as TSV dump file [123MB]
  • Database tables exported as mysql dump file [101MB]
  • Peptide CDS and chromosomal coordinates [241MB]
  • Peptide CDS coordinates [138MB]
  • Peptide sequences in FASTA format [3MB]
Human Urine 2013-08 PSM FDR = P >= 0.9
  • Biosequence Set in FASTA format [278MB]
  • Database tables exported as an XML file [17MB]
  • Database tables exported as mysql dump file [10MB]
  • Peptide CDS and chromosomal coordinates [22MB]
  • Peptide CDS coordinates [11MB]
  • Peptide sequences in FASTA format [679KB]
Human Urine 2012-09 PSM FDR = 0.003
  • Biosequence Set in FASTA format [229MB]
  • Database tables exported as an XML file [253MB]
  • Database tables exported as mysql dump file [152MB]
  • Peptide CDS and chromosomal coordinates [5MB]
  • Peptide CDS coordinates [2MB]
  • Peptide sequences in FASTA format [195KB]
Human Urine 2010-06 PSM FDR = 0.003
  • Biosequence Set in FASTA format [157MB]
  • Database tables exported as an XML file [97MB]
  • Database tables exported as mysql dump file [59MB]
  • Peptide CDS and chromosomal coordinates [5MB]
  • Peptide CDS coordinates [2MB]
  • Peptide sequences in FASTA format [195KB]

Help

Complete description of each of the available download formats

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