The Rice Phosphoproteome PeptideAtlas provides a compendium of results from uniformly reprocessed mass spectrometry proteomics datasets.
Available datasets of phosphopeptide enrichment rice samples were reprocessed from the raw files using the Trans-Proteomic Pipeline suite of tools.
A publication describing the Rice Phospho PeptideAtlas build is in progress. For now, please just reference this URL, and check back later for a citation.
Below are individual Rice Phospho PeptideAtlas builds available for download in various flat file formats. Note that not all files contain all information from the build. A build subtitled "PSM FDR=0.002" denotes a PSM FDR threshold of 0.002 (0.2%) is applied to every sample in the build.
Complete description of each of the available download formats
We gratefully acknowledge the support for the Rice Phospho PeptideAtlas from the National Science Foundation grant DBI-1933311 “PTMexchange: Globally harmonized re-analysis and sharing of data on post-translational modifications” .