Below are individual Drosophila PeptideAtlas builds available for download in various flat file formats. Note that not all files contain all information from the build. A link named "P>=0.9" denotes a build in which only peptides that were scored by PeptideAtlas with a P>=0.9 are included.

Peptide sequences in FASTA format:
PSM FDR = 0.001

Biosequence Set in FASTA format:
PSM FDR = 0.001

Peptide CDS coordinates:
PSM FDR = 0.001

Database tables exported as an XML file:
PSM FDR = 0.001

Database tables exported as mysql dump file:
PSM FDR = 0.001

Peptide CDS and chromosomal coordinates:
PSM FDR = 0.001

Peptide sequences in FASTA format:
P >= 0.9

Biosequence Set in FASTA format:
P >= 0.9

Peptide CDS coordinates:
P >= 0.9

Database tables exported as an XML file:
P >= 0.9

Database tables exported as mysql dump file:
P >= 0.9

Peptide CDS and chromosomal coordinates:
P >= 0.9