Sample Accession
Name
Organism
Resources
Description
Data Contributors
Related Publications
N/A
TAP-PSD95
Mouse
RAW_format
(7.7 GB)
Targeted Tandem Affinity Purification of PSD-95 recovers core postsic complexes and schizophrenia susceptibility proteins; Esperanza Fernández et al., MSB, 2009, accepted
Esperanza Fernández, Mark O. Collins et al
N/A
Yeast_ETD
Yeast
mzXML_format
(2.6 GB)
RAW_format
(5.3 GB)
Decision tree-driven tandem mass spectrometry for shotgun proteomics; Swaney et al., Nat Method 2008 November. 5(11).
Danielle L. Swaney, Graeme C. McAlister and Joshua J. Coon
Swaney et al. (2008)
PAe000765
20070612_LTQFT
Human
mzXML_format
(513.9 MB)
RAW_format
(477.8 MB)
Search_Results
(67.8 MB)
sequest_params
ProteinProphet_file
(0.9 MB)
README
human urine on LTQ-FT
PAe000762
20070531_LTQ
Human
mzXML_format
(513.9 MB)
RAW_format
(477.8 MB)
Search_Results
(56.7 MB)
sequest_params
ProteinProphet_file
(9.7 MB)
README
human urine on LTQ
PAe000350
Li_LTQFT
Leptospira interrogans
mzXML_format
(418.5 MB)
Search_Results
sequest_params
ProteinProphet_file
README
Li_LTQFT
Johan Malmstroem Martin Beck
PAe000401
Li_LTQFT_incl
Leptospira interrogans
mzXML_format
(609.0 MB)
Search_Results
sequest_params
ProteinProphet_file
README
Li_LTQFT_incl
Johan Malmstroem
PAe000352
Li_OGE1_3-10_LTQ
Leptospira interrogans
mzXML_format
(929.0 MB)
Search_Results
sequest_params
ProteinProphet_file
README
Li_OGE1_3-10_LTQ
Johan Malmstroem Martin Beck
PAe000351
Li_OGE3-10_LTQ
Leptospira interrogans
mzXML_format
(1.2 GB)
Search_Results
sequest_params
ProteinProphet_file
README
Li_OGE3-10_LTQ
Johan Malmstroem Martin Beck
PAe000349
Li_OGE3-7_LTQ
Leptospira interrogans
mzXML_format
(1.4 GB)
Search_Results
sequest_params
ProteinProphet_file
README
Li_OGE3-7_LTQ
Johan Malmstroem Martin Beck
PAe000383
Li_spores_MALDI_iTRAQ
Leptospira interrogans
mzXML_format
(13.4 MB)
Search_Results
sequest_params
ProteinProphet_file
README
Li_spores_MALDI_iTRAQ
Johan Malmstroem
PAe000432
CMOP_Ce_CytD
C Elegans
mzXML_format
RAW_format
(11.0 GB)
Search_Results
(2.0 GB)
ProteinProphet_file
(2.8 MB)
README
Cyt D
Sabine Schrimpf, Lukas Reiter
Schrimpf et al. (2009)
PAe000422
CMOP_Ce_CytL1
C Elegans
mzXML_format
(19.6 GB)
RAW_format
(16.6 GB)
Search_Results
ProteinProphet_file
README
Cyt L1
Sabine Schrimpf, Lukas Reiter
Schrimpf et al. (2009)
PAe000441
CMOP_Ce_CytProtFFE
C Elegans
mzXML_format
RAW_format
(2.7 GB)
Search_Results
(1.1 GB)
sequest_params
ProteinProphet_file
(1.6 MB)
README
Cyt_prot_FFE (01.11.05)_MCX (08.11.05)
Sabine Schrimpf, Lukas Reiter
Schrimpf et al. (2009)
PAe000425
CMOP_Ce_DicerGFP
C Elegans
mzXML_format
RAW_format
(3.1 GB)
Search_Results
(479.4 MB)
sequest_params
ProteinProphet_file
(0.6 MB)
README
Dicer GFP
Sabine Schrimpf, Lukas Reiter
Schrimpf et al. (2009)
PAe000433
CMOP_Ce_EmbryosBleached
C Elegans
mzXML_format
(7.9 GB)
RAW_format
(6.7 GB)
Search_Results
(1.7 GB)
sequest_params
ProteinProphet_file
README
embryos bleached
Sabine Schrimpf, Lukas Reiter
Schrimpf et al. (2009)
PAe000440
CMOP_Ce_EmbryosEgg
C Elegans
mzXML_format
RAW_format
(4.3 GB)
Search_Results
(997.9 MB)
sequest_params
ProteinProphet_file
(2.4 MB)
README
embryos
Sabine Schrimpf, Lukas Reiter
Schrimpf et al. (2009)
PAe000430
CMOP_Ce_EmbryosLaid
C Elegans
mzXML_format
(3.7 GB)
RAW_format
(3.2 GB)
Search_Results
sequest_params
ProteinProphet_file
README
embryos laid
Sabine Schrimpf, Lukas Reiter
Schrimpf et al. (2009)
PAe000438
CMOP_Ce_ICATFFE
C Elegans
mzXML_format
(15.7 GB)
RAW_format
(4.7 GB)
Search_Results
sequest_params
ProteinProphet_file
README
FFE-ICAT 04./05.10.05
Sabine Schrimpf, Lukas Reiter
Schrimpf et al. (2009)
PAe000424
CMOP_Ce_ICATTest
C Elegans
mzXML_format
(341.3 MB)
RAW_format
(424.0 MB)
Search_Results
sequest_params
ProteinProphet_file
README
2 test samples MJ
Sabine Schrimpf, Lukas Reiter
Schrimpf et al. (2009)
PAe000426
CMOP_Ce_IPG
C Elegans
mzXML_format
(7.2 GB)
RAW_format
(6.2 GB)
Search_Results
sequest_params
ProteinProphet_file
README
IPG peptides
Sabine Schrimpf, Lukas Reiter
Schrimpf et al. (2009)
PAe000421
CMOP_Ce_IPG2
C Elegans
mzXML_format
(13.8 GB)
RAW_format
(11.8 GB)
Search_Results
sequest_params
ProteinProphet_file
README
IPG 2 digest (peptides)
Sabine Schrimpf, Lukas Reiter
Schrimpf et al. (2009)
PAe000423
CMOP_Ce_MemD
C Elegans
mzXML_format
(15.8 GB)
RAW_format
(13.5 GB)
Search_Results
sequest_params
ProteinProphet_file
README
Mem D
Sabine Schrimpf, Lukas Reiter
Schrimpf et al. (2009)
PAe000431
CMOP_Ce_MemL1
C Elegans
mzXML_format
(11.8 GB)
RAW_format
(10.0 GB)
Search_Results
sequest_params
ProteinProphet_file
README
Mem L1
Sabine Schrimpf, Lukas Reiter
Schrimpf et al. (2009)
PAe000428
CMOP_Ce_MemL1Cys
C Elegans
mzXML_format
(6.8 GB)
RAW_format
(5.8 GB)
Search_Results
sequest_params
ProteinProphet_file
README
Mem L1
Sabine Schrimpf, Lukas Reiter
Schrimpf et al. (2009)
PAe000434
CMOP_Ce_Mito
C Elegans
mzXML_format
(12.4 GB)
RAW_format
(10.9 GB)
Search_Results
sequest_params
ProteinProphet_file
README
mitochondria RG/urea
Sabine Schrimpf, Lukas Reiter
Schrimpf et al. (2009)
PAe000419
CMOP_Ce_MitoMem
C Elegans
mzXML_format
(1.7 GB)
RAW_format
(1.4 GB)
Search_Results
sequest_params
ProteinProphet_file
README
mit_mem
Sabine Schrimpf, Lukas Reiter
Schrimpf et al. (2009)
PAe000435
CMOP_Ce_MixedFFE0111
C Elegans
mzXML_format
(16.2 GB)
RAW_format
(9.6 GB)
Search_Results
sequest_params
ProteinProphet_file
README
peptide FFE 01.11.05
Sabine Schrimpf, Lukas Reiter
Schrimpf et al. (2009)
PAe000437
CMOP_Ce_MixedFFE0609MCX
C Elegans
mzXML_format
(2.0 GB)
RAW_format
(1.7 GB)
Search_Results
sequest_params
ProteinProphet_file
README
FFE 0609 MCX andSep Pak
Sabine Schrimpf, Lukas Reiter
Schrimpf et al. (2009)
PAe000439
CMOP_Ce_MixedFFE0609SCX
C Elegans
mzXML_format
(8.7 GB)
RAW_format
(7.5 GB)
Search_Results
sequest_params
ProteinProphet_file
README
FFE 0609 SCX
Sabine Schrimpf, Lukas Reiter
Schrimpf et al. (2009)
PAe000436
CMOP_Ce_MixedFFE2010SCX
C Elegans
mzXML_format
(3.0 GB)
RAW_format
(2.5 GB)
Search_Results
sequest_params
ProteinProphet_file
README
FFE 2010 SCX
Sabine Schrimpf, Lukas Reiter
Schrimpf et al. (2009)
PAe000420
CMOP_Ce_S2
C Elegans
mzXML_format
(20.2 GB)
RAW_format
(17.3 GB)
Search_Results
sequest_params
ProteinProphet_file
README
S2
Sabine Schrimpf, Lukas Reiter
Schrimpf et al. (2009)
PAe000429
CMOP_Ce_VHL1Del
C Elegans
mzXML_format
(13.4 GB)
RAW_format
(11.5 GB)
Search_Results
sequest_params
ProteinProphet_file
README
young adults (Ati: vhl-1 deletion)
Sabine Schrimpf, Lukas Reiter
Schrimpf et al. (2009)
PAe001337
spc-course
Yeast
mzXML_format
(533 MB)
RAW_format
(308 MB)
Search_Results
(11.7 MB)
ProteinProphet_file
(0.4 MB)
README
Daniel Martin
PAe000259
Halo_itraq12
Halobacterium
mzXML_format
(3.9 GB)
Search_Results
(2.2 GB)
sequest_params
ProteinProphet_file
(0.2 MB)
README
Proteins harvested from cultures recovering from 0Gy (control) or 2500Gy (experimental) of gamma irradiation stress and labeled with iTRAQ, multiplex sample #12 with three time points 30, 40, 60 min during recovery compared against common reference; Whitehead et al., 2006 Mol Syst Biol. 2(47). Replicate of #11.
Kenia Whitehead and Nitin Baliga
Whitehead et al. (2006)
PAe000244
pum4
Halobacterium
mzXML_format
(8.2 MB)
Search_Results
(2.9 MB)
sequest_params
ProteinProphet_file
(0.0 MB)
README
enrichment for specialized purple membrane proteins; Goo et al., unpublished data.
Y. A. Goo, E. C. Yi, N. S. Baliga, W. A. Tao, M. Pan, R. Aebersold, D. R. Goodlett, L. Hood and W. V. Ng
Goo et al. (2003)
PAe000219
YAGmem1
Halobacterium
mzXML_format
(11.2 MB)
Search_Results
(2.8 MB)
sequest_params
ProteinProphet_file
(0.0 MB)
README
enrichment for membrane proteins; Goo et al., 2003, Mol Cell Proteomics 2(8):505
Goodlett, L. Hood and W. V. Ng
Goo et al. (2003)
PAe000217
YAGmem1220
Halobacterium
mzXML_format
(12.8 MB)
Search_Results
(4.7 MB)
sequest_params
ProteinProphet_file
(0.0 MB)
README
enrichment for membrane proteins; GPF 1200-2000 m/z; Goo et al., 2003, Mol Cell Proteomics 2(8):506
Y. A. Goo, E. C. Yi, N. S. Baliga, W. A. Tao, M. Pan, R. Aebersold, D. R. Goodlett, L. Hood and W. V. Ng
Goo et al. (2003)
PAe000248
YAGmem1220_rpt1
Halobacterium
mzXML_format
(19.6 MB)
Search_Results
(2.9 MB)
sequest_params
ProteinProphet_file
(0.0 MB)
README
enrichment for membrane proteins; GPF 1200-2000 m/z; rpt=replicate; Goo et al., 2003, Mol Cell Proteomics 2(8):507
Y. A. Goo, E. C. Yi, N. S. Baliga, W. A. Tao, M. Pan, R. Aebersold, D. R. Goodlett, L. Hood and W. V. Ng
Goo et al. (2003)
PAe000251
YAGmem48
Halobacterium
mzXML_format
(12.5 MB)
Search_Results
(7.9 MB)
sequest_params
ProteinProphet_file
(0.0 MB)
README
enrichment for membrane proteins; 400-800 m/z; Goo et al., 2003, Mol Cell Proteomics 2(8):508
Y. A. Goo, E. C. Yi, N. S. Baliga, W. A. Tao, M. Pan, R. Aebersold, D. R. Goodlett, L. Hood and W. V. Ng
Goo et al. (2003)
PAe000179
YAGmem812
Halobacterium
mzXML_format
(12.2 MB)
Search_Results
(8.2 MB)
sequest_params
ProteinProphet_file
(0.0 MB)
README
enrichment for membrane proteins; 800-1200 m/z; Goo et al., 2003, Mol Cell Proteomics 2(8):509
Y. A. Goo, E. C. Yi, N. S. Baliga, W. A. Tao, M. Pan, R. Aebersold, D. R. Goodlett, L. Hood and W. V. Ng
Goo et al. (2003)
PAe000247
yagpm
Halobacterium
mzXML_format
(12.9 MB)
Search_Results
(4.1 MB)
sequest_params
ProteinProphet_file
(0.0 MB)
README
enrichment for specialized purple membrane proteins, cell culture #1, Goo et al., unpublished data.
Y. A. Goo, E. C. Yi, N. S. Baliga, W. A. Tao, M. Pan, R. Aebersold, D. R. Goodlett, L. Hood and W. V. Ng
Goo et al. (2003)
PAe000256
yagpm2_1
Halobacterium
mzXML_format
(8.1 MB)
Search_Results
(4.1 MB)
sequest_params
ProteinProphet_file
(0.0 MB)
README
enrichment for specialized purple membrane proteins, cell culture #2 Goo et al., unpublished data.
Y. A. Goo, E. C. Yi, N. S. Baliga, W. A. Tao, M. Pan, R. Aebersold, D. R. Goodlett, L. Hood and W. V. Ng
Goo et al. (2003)
PAe000252
yagpm2_2
Halobacterium
mzXML_format
(8.5 MB)
Search_Results
(3.5 MB)
sequest_params
ProteinProphet_file
(0.0 MB)
README
enrichment for specialized purple membrane proteins, cell culture #2 Goo et al., unpublished data.
Y. A. Goo, E. C. Yi, N. S. Baliga, W. A. Tao, M. Pan, R. Aebersold, D. R. Goodlett, L. Hood and W. V. Ng
Goo et al. (2003)
PAe000203
yagpm2_3
Halobacterium
mzXML_format
(11.6 MB)
Search_Results
(2.2 MB)
sequest_params
ProteinProphet_file
(0.0 MB)
README
enrichment for specialized purple membrane proteins, cell culture #2 Goo et al., unpublished data.
Y. A. Goo, E. C. Yi, N. S. Baliga, W. A. Tao, M. Pan, R. Aebersold, D. R. Goodlett, L. Hood and W. V. Ng
Goo et al. (2003)
PAe000193
yagpm3_1
Halobacterium
mzXML_format
(7.9 MB)
Search_Results
(3.3 MB)
sequest_params
ProteinProphet_file
(0.0 MB)
README
enrichment for specialized purple membrane proteins, cell culture #3; Goo et al., unpublished data.
Y. A. Goo, E. C. Yi, N. S. Baliga, W. A. Tao, M. Pan, R. Aebersold, D. R. Goodlett, L. Hood and W. V. Ng
Goo et al. (2003)
PAe000187
yagpm3_2
Halobacterium
mzXML_format
(8.2 MB)
Search_Results
(2.8 MB)
sequest_params
ProteinProphet_file
(0.0 MB)
README
enrichment for specialized purple membrane proteins, cell culture #3; Goo et al., unpublished data.
Y. A. Goo, E. C. Yi, N. S. Baliga, W. A. Tao, M. Pan, R. Aebersold, D. R. Goodlett, L. Hood and W. V. Ng
Goo et al. (2003)
PAe000189
yagpm3_3
Halobacterium
mzXML_format
(11.0 MB)
Search_Results
(1.7 MB)
sequest_params
ProteinProphet_file
(0.0 MB)
README
enrichment for specialized purple membrane proteins, cell culture #3; Goo et al., unpublished data.
Y. A. Goo, E. C. Yi, N. S. Baliga, W. A. Tao, M. Pan, R. Aebersold, D. R. Goodlett, L. Hood and W. V. Ng
Goo et al. (2003)
PAe000240
yagpt
Halobacterium
mzXML_format
(12.8 MB)
Search_Results
(4.6 MB)
sequest_params
ProteinProphet_file
(0.0 MB)
README
enrichment for proteins in precipitant following ultracentrifugation; Goo et al., 2003, Mol Cell Proteomics 2(8):505
Y. A. Goo, E. C. Yi, N. S. Baliga, W. A. Tao, M. Pan, R. Aebersold, D. R. Goodlett, L. Hood and W. V. Ng
Goo et al. (2003)
PAe000224
YAGsn1
Halobacterium
mzXML_format
(11.1 MB)
Search_Results
(2.6 MB)
sequest_params
ProteinProphet_file
(0.0 MB)
README
eins; Goo et al., 2003, Mol Cell Proteomics 2(8):505
Y. A. Goo, E. C. Yi, N. S. Baliga, W. A. Tao, M. Pan, R. Aebersold, D. R. Goodlett, L. Hood and W. V. Ng
Goo et al. (2003)
PAe000173
yagsn1_1120rpt
Halobacterium
mzXML_format
(16.3 MB)
Search_Results
(4.9 MB)
sequest_params
ProteinProphet_file
(0.0 MB)
README
replicate enrichment for soluble proteins; 1100-2000 m/z; Goo et al., 2003, Mol Cell Proteomics 2(8):506
Y. A. Goo, E. C. Yi, N. S. Baliga, W. A. Tao, M. Pan, R. Aebersold, D. R. Goodlett, L. Hood and W. V. Ng
Goo et al. (2003)
PAe000220
yagsn1_48rpt
Halobacterium
mzXML_format
(14.2 MB)
Search_Results
(6.6 MB)
sequest_params
ProteinProphet_file
(0.0 MB)
README
replicate enrichment for soluble proteins; 400-800 m/z; Goo et al., 2003, Mol Cell Proteomics 2(8):507
Y. A. Goo, E. C. Yi, N. S. Baliga, W. A. Tao, M. Pan, R. Aebersold, D. R. Goodlett, L. Hood and W. V. Ng
Goo et al. (2003)
PAe000210
yagsn1_712rpt
Halobacterium
mzXML_format
(14.0 MB)
Search_Results
(6.5 MB)
sequest_params
ProteinProphet_file
(0.0 MB)
README
replicate enrichment for soluble proteins; 700-1200 m/z; Goo et al., 2003, Mol Cell Proteomics 2(8):508
Y. A. Goo, E. C. Yi, N. S. Baliga, W. A. Tao, M. Pan, R. Aebersold, D. R. Goodlett, L. Hood and W. V. Ng
Goo et al. (2003)
PAe000249
yagsn1_YAGsn2
Halobacterium
mzXML_format
(11.2 MB)
Search_Results
(2.7 MB)
sequest_params
ProteinProphet_file
(0.0 MB)
README
replicate enrichment for soluble proteins; Goo et al., 2003, Mol Cell Proteomics 2(8):509
Y. A. Goo, E. C. Yi, N. S. Baliga, W. A. Tao, M. Pan, R. Aebersold, D. R. Goodlett, L. Hood and W. V. Ng
Goo et al. (2003)
PAe000181
yagsn2_1120rpt
Halobacterium
mzXML_format
(16.1 MB)
Search_Results
(5.0 MB)
sequest_params
ProteinProphet_file
(0.0 MB)
README
replicate enrichment for soluble proteins; 1100-2000 m/z; Goo et al., 2003, Mol Cell Proteomics 2(8):510
Y. A. Goo, E. C. Yi, N. S. Baliga, W. A. Tao, M. Pan, R. Aebersold, D. R. Goodlett, L. Hood and W. V. Ng
Goo et al. (2003)
PAe000218
YAGsn2_48rpt
Halobacterium
mzXML_format
(13.5 MB)
Search_Results
(6.5 MB)
sequest_params
ProteinProphet_file
(0.0 MB)
README
replicate enrichment for soluble proteins; 400-800 m/z; Goo et al., 2003, Mol Cell Proteomics 2(8):511
Y. A. Goo, E. C. Yi, N. S. Baliga, W. A. Tao, M. Pan, R. Aebersold, D. R. Goodlett, L. Hood and W. V. Ng
Goo et al. (2003)
PAe000241
yagsn2_712rpt
Halobacterium
mzXML_format
(14.1 MB)
Search_Results
(6.4 MB)
sequest_params
ProteinProphet_file
(0.0 MB)
README
Mol Cell Proteomics 2(8):512
Y. A. Goo, E. C. Yi, N. S. Baliga, W. A. Tao, M. Pan, R. Aebersold, D. R. Goodlett, L. Hood and W. V. Ng
Goo et al. (2003)
PAe000209
YAGwall
Halobacterium
mzXML_format
(12.1 MB)
Search_Results
(2.1 MB)
sequest_params
ProteinProphet_file
(0.0 MB)
README
enrichment for Halobacterium cell wall proteins, Goo et al., unpublished data.
Y. A. Goo, E. C. Yi, N. S. Baliga, W. A. Tao, M. Pan, R. Aebersold, D. R. Goodlett, L. Hood and W. V. Ng
Goo et al. (2003)
PAe000254
yagwall_1120rpt
Halobacterium
mzXML_format
(22.5 MB)
Search_Results
(1.8 MB)
sequest_params
ProteinProphet_file
(0.0 MB)
README
enrichment for Halobacterium cell wall proteins; 1100-2000 m/z; Goo et al., unpublished data.
Y. A. Goo, E. C. Yi, N. S. Baliga, W. A. Tao, M. Pan, R. Aebersold, D. R. Goodlett, L. Hood and W. V. Ng
Goo et al. (2003)
PAe000205
yagwall_48rpt
Halobacterium
mzXML_format
(12.7 MB)
Search_Results
(4.6 MB)
sequest_params
ProteinProphet_file
(0.0 MB)
README
enrichment for Halobacterium cell wall proteins; 400-800m/z; Goo et al., unpublished data.
Y. A. Goo, E. C. Yi, N. S. Baliga, W. A. Tao, M. Pan, R. Aebersold, D. R. Goodlett, L. Hood and W. V. Ng
Goo et al. (2003)
PAe000225
yagwall_712rpt
Halobacterium
mzXML_format
(16.6 MB)
Search_Results
(3.1 MB)
sequest_params
ProteinProphet_file
(0.0 MB)
README
enrichment for Halobacterium cell wall proteins; 700-1200 m/z; Goo et al., unpublished data.
Y. A. Goo, E. C. Yi, N. S. Baliga, W. A. Tao, M. Pan, R. Aebersold, D. R. Goodlett, L. Hood and W. V. Ng
Goo et al. (2003)
PAe000330
01_glyco
Human
mzXML_format
(1.0 GB)
RAW_format
(972.9 MB)
Search_Results
(33.7 MB)
ProteinProphet_file
(0.2 MB)
README
01_glyco
Amanda Paulovich
Paulavich et al. (2007) J Proteome Res. 2007 Feb;6(2):828-36
PAe000032
031003_BALF2
Human
mzXML_format
(238.5 MB)
Search_Results
(145.0 MB)
sequest_params
ProteinProphet_file
(0.2 MB)
README
Human bronchoalveolar lavage fluid
Samuel Donohoe, Lynn Schnapp (UW/Harborview)
Schnapp et al. (2006)
PAe000033
032403_BALF4_glypep
Human
mzXML_format
(72.0 MB)
Search_Results
(63.4 MB)
sequest_params
ProteinProphet_file
(0.1 MB)
README
Human bronchoalveolar lavage fluid
Samuel Donohoe, Lynn Schnapp (UW/Harborview)
Schnapp et al. (2006)
PAe000034
041803_BALF3
Human
mzXML_format
(641.1 MB)
Search_Results
(133.1 MB)
sequest_params
ProteinProphet_file
(0.6 MB)
README
Human bronchoalveolar lavage fluid
Samuel Donohoe, Lynn Schnapp (UW/Harborview)
Schnapp et al. (2006)
PAe000035
050603_BALF11
Human
mzXML_format
(597.2 MB)
Search_Results
(247.6 MB)
sequest_params
ProteinProphet_file
(0.7 MB)
README
Human bronchoalveolar lavage fluid
Samuel Donohoe, Lynn Schnapp (UW/Harborview)
Schnapp et al. (2006)
PAe000036
051503_BAL20_gly_hui
Human
mzXML_format
(21.8 MB)
Search_Results
(11.7 MB)
sequest_params
ProteinProphet_file
(0.0 MB)
README
Human bronchoalveolar lavage fluid
Samuel Donohoe, Lynn Schnapp (UW/Harborview)
Schnapp et al. (2006)
PAe000037
051503_BAL20_gly_lec
Human
mzXML_format
(66.0 MB)
Search_Results
(27.2 MB)
sequest_params
ProteinProphet_file
(0.1 MB)
README
Human bronchoalveolar lavage fluid
Sam Donohoe, Lynn Schnapp(UW) et al.
Schnapp et al. (2006)
PAe000331
15_clinprot_c3
Human
mzXML_format
(454.1 MB)
RAW_format
(420.3 MB)
Search_Results
(22.2 MB)
ProteinProphet_file
(0.4 MB)
README
15_clinprot_c3
Amanda Paulovich
Paulavich et al. (2007) J Proteome Res. 2007 Feb;6(2):828-36
PAe000338
16_clinprot_c8
Human
mzXML_format
(558.5 MB)
RAW_format
(515.6 MB)
Search_Results
(22.9 MB)
ProteinProphet_file
(0.3 MB)
README
16_clinprot_c8
Amanda Paulovich
Paulavich et al. (2007) J Proteome Res. 2007 Feb;6(2):828-36
PAe000332
17_wcx
Human
mzXML_format
(778.2 MB)
RAW_format
(724.2 MB)
Search_Results
(27.9 MB)
ProteinProphet_file
(0.4 MB)
README
17_wcx
Amanda Paulovich
Paulavich et al. (2007) J Proteome Res. 2007 Feb;6(2):828-36
PAe000335
18_size
Human
mzXML_format
(660.4 MB)
RAW_format
(545.0 MB)
Search_Results
(27.9 MB)
ProteinProphet_file
(0.2 MB)
README
18_size
Amanda Paulovich
Paulavich et al. (2007) J Proteome Res. 2007 Feb;6(2):828-36
PAe000333
19_proteinag
Human
mzXML_format
(544.7 MB)
RAW_format
(503.6 MB)
Search_Results
(24.5 MB)
ProteinProphet_file
(0.1 MB)
README
19_proteinag
Amanda Paulovich
Paulavich et al. (2007) J Proteome Res. 2007 Feb;6(2):828-36
PAe000334
20_cys
Human
mzXML_format
(775.7 MB)
RAW_format
(716.0 MB)
Search_Results
(25.9 MB)
ProteinProphet_file
(0.2 MB)
README
20_cys
Amanda Paulovich
Paulavich et al. (2007) J Proteome Res. 2007 Feb;6(2):828-36
PAe000337
21_unfract
Human
mzXML_format
(442.4 MB)
RAW_format
(413.6 MB)
Search_Results
(14.4 MB)
ProteinProphet_file
(0.3 MB)
README
21_unfract
Amanda Paulovich
Paulavich et al. (2007) J Proteome Res. 2007 Feb;6(2):828-36
PAe000336
22_mars
Human
mzXML_format
(656.9 MB)
RAW_format
(609.7 MB)
Search_Results
(36.6 MB)
ProteinProphet_file
(0.3 MB)
README
22_mars
Amanda Paulovich
Paulavich et al. (2007) J Proteome Res. 2007 Feb;6(2):828-36
PAe000114
A8_IP
Human
mzXML_format
(515.9 MB)
RAW_format
(462.0 MB)
Search_Results
(431.1 MB)
sequest_params
ProteinProphet_file
(1.6 MB)
README
Human Erythroleukemia K562 cell line
Katherine Resing (U Col), Meyer-Arendt K, Mendoza AM, Aveline-Wolf LD Jonscher KR, Pierce KG, Old WM, Cheung HT, Russell S, Wattawa JL, Goehle GR, Knight RD, Ahn NG.
Resing et al. 2004, Anal Chem. 2004 Jul 1;76(13):3556-68.
PAe000112
AdducinII
Human
mzXML_format
(23.1 MB)
Search_Results
(22.2 MB)
sequest_params
ProteinProphet_file
(0.1 MB)
README
Purified Human Adducin protein
Dan Martin
PAe000071
b1-CIT_glyco_lcq
Human
mzXML_format
(1.2 GB)
Search_Results
(445.8 MB)
sequest_params
ProteinProphet_file
(0.8 MB)
README
ycopeptide
HUPO Lab 2 is Aebersold Lab, Institute for Systems Biology, Seattle, WA
Omenn 2004, Proteomics, V4, I5, 1235-1240
PAe000072
b1-CIT_glyco_qstar
Human
mzXML_format
(11.2 MB)
Search_Results
(16.9 MB)
sequest_params
ProteinProphet_file
(0.1 MB)
README
HUPO sample b1-CIT glycopeptide
HUPO Lab 2 is Aebersold Lab, Institute for Systems Biology, Seattle, WA
Omenn 2004, Proteomics, V4, I5, 1235-1240 Omenn 2004, Proteomics, V4, I5, 1235-1240
PAe000014
Caco2vsEcoli
Human
mzXML_format
(552.3 MB)
RAW_format
(22.6 MB)
Search_Results
(403.7 MB)
sequest_params
ProteinProphet_file
(0.8 MB)
README
Human Caco-2 intestinal epithelial cell line; labeled with CL-ICAT; IPI
Sam Donohoe
Hardwidge PR, et al. 2004, J Biol Chem. 279(19):20127-36.
PAe000044
Cytoskeleton
Human
mzXML_format
(319.7 MB)
Search_Results
(214.0 MB)
sequest_params
ProteinProphet_file
(0.4 MB)
README
Human red blood cells
Dan Martin
PAe000314
hair-ucd_hr_cam
Human
mzXML_format
(797.7 MB)
RAW_format
(714.0 MB)
Search_Results
(219.6 MB)
sequest_params
ProteinProphet_file
(0.7 MB)
README
Human Hair Sample HR
Y Lee
PAe000311
hair-ucd_jy_cam
Human
mzXML_format
(374.5 MB)
RAW_format
(338.1 MB)
Search_Results
(218.4 MB)
sequest_params
ProteinProphet_file
(0.8 MB)
README
Human Hair Sample JY
Y Lee
PAe000315
hair-ucd_sm_cam
Human
mzXML_format
(363.3 MB)
RAW_format
(327.7 MB)
Search_Results
(214.9 MB)
sequest_params
ProteinProphet_file
(0.8 MB)
README
Human Hair Sample SM
Y Lee
PAe000021
HFHp100IFN
Human
mzXML_format
(291.3 MB)
RAW_format
(260.0 MB)
Search_Results
(79.4 MB)
sequest_params
ProteinProphet_file
(0.1 MB)
README
CL-ICAT, IPI, IFN treatment on liver cells: Membrane fraction (P100) of HFH cells +/- IFN
Wei Yan, Michael G. Katze
Yan, W. et al. (2004) Mol Cell Proteomics. 2004 Jul 21
PAe000022
HFHp3IFN
Human
mzXML_format
(308.5 MB)
RAW_format
(277.9 MB)
Search_Results
(73.2 MB)
sequest_params
ProteinProphet_file
(0.2 MB)
README
CL-ICAT, IFN treatment on liver cells: Nuclear fraction (P3) of HFH cells +/- IFN
Wei Yan, Nelson Fausto
Yan, W. et al. (2004) Mol Cell Proteomics. 2004 Jul 21
PAe000023
HFHs100IFN
Human
mzXML_format
(1.8 GB)
RAW_format
(2.1 GB)
Search_Results
(988.3 MB)
sequest_params
ProteinProphet_file
(1.5 MB)
README
CL-ICAT, IFN treatment on liver cells: Cytosolic fraction (S100) of Huh7 cells +/- IFN
Wei Yan, Nelson Fausto
Yan, W. et al. (2004) Mol Cell Proteomics. 2004 Jul 21
PAe000276
HsPlasma_tryp_alkylated
Human
mzXML_format
(1.3 GB)
raw_format
(1.2 GB)
Search_Results
(1.3 GB)
ProteinProphet_file
(3.7 MB)
README
Qian Plasma alkylated samples
Weijun Qian
PAe000278
HsPlasma_tryp_nonalkylated
Human
mzXML_format
(5.9 GB)
RAW_format
(1.1 GB)
Search_Results
(4.8 GB)
ProteinProphet_file
(7.3 MB)
README
Qian Plasma non alkylated samples
Weijun Qian
PAe000011
Huh7-P100_IFN
Human
mzXML_format
(656.4 MB)
RAW_format
(588.1 MB)
Search_Results
(311.7 MB)
ProteinProphet_file
(0.4 MB)
README
Interferon (IFN) treatment on liver cells: Membrane fraction (P100) of Huh7 cells +/- IFN. ICAT.
Wei Yan, Michael G. Katze
Yan, W. et al. (2004) Genome Biology 2004, 5:R54 Yan, W. et al. (2004) Mol Cell Proteomics. 2004 Jul 21
PAe000012
Huh7-P3_IFN
Human
mzXML_format
(523.7 MB)
Search_Results
(165.9 MB)
ProteinProphet_file
(0.4 MB)
README
IFN treatment on liver cells: Nuclear fraction (P3) of Huh7 cells +/- IFN
Wei Yan, Michael G. Katze
Yan, W. et al. (2004) Genome Biology 2004, 5:R54 Yan, W. et al. (2004) Mol Cell Proteomics. 2004 Jul 21
PAe000013
Huh7-S100_IFN
Human
mzXML_format
(631.6 MB)
RAW_format
(566.6 MB)
Search_Results
(334.9 MB)
ProteinProphet_file
(0.6 MB)
README
IFN treatment on liver cells: Cytosolic fraction (S100) of Huh7 cells +/- IFN
Wei Yan, Michael G. Katze
Yan, W. et al. (2004) Genome Biology 2004, 5:R54 Yan, W. et al. (2004) Mol Cell Proteomics. 2004 Jul 21
PAe000097
HUPO12_run31
Human
mzXML_format
(31.0 MB)
dtapack_format
(30.4 MB)
Search_Results
(84.7 MB)
ProteinProphet_file
(0.3 MB)
README
HUPO plasma sample
HUPO Lab 12 is Hefta, Bristol-Myers Squibb, Pennigton, NJ, USA
Omenn 2004, Proteomics, V4, I5, 1235-1240
PAe000098
HUPO12_run32
Human
mzXML_format
(34.7 MB)
dtapack_format
(34.8 MB)
Search_Results
(80.8 MB)
ProteinProphet_file
(0.2 MB)
README
HUPO plasma sample
12 is Hefta, Bristol-Myers Squibb, Pennigton, NJ, USA
Omenn 2004, Proteomics, V4, I5, 1235-1240
PAe000099
HUPO12_run33
Human
mzXML_format
(43.8 MB)
dtapack_format
(48.1 MB)
Search_Results
(90.3 MB)
ProteinProphet_file
(0.5 MB)
README
HUPO plasma sample
HUPO Lab 12 is Hefta, Bristol-Myers Squibb, Pennigton, NJ, USA
Omenn 2004, Proteomics, V4, I5, 1235-1240
PAe000100
HUPO12_run34
Human
mzXML_format
(22.4 MB)
dtapack_format
(19.6 MB)
Search_Results
(64.3 MB)
ProteinProphet_file
(0.2 MB)
README
HUPO plasma sample
HUPO Lab 12 is Hefta, Bristol-Myers Squibb, Pennigton, NJ, USA
Omenn 2004, Proteomics, V4, I5, 1235-1240
PAe000096
HUPO22_M_CA_S
Human
mzXML_format
(2.4 GB)
RAW_format
(2.1 GB)
Search_Results
(608.0 MB)
ProteinProphet_file
(0.8 MB)
README
HUPO plasma sample
HUPO Lab 22 is Paik, Yonsei Proteome Research Center, Seoul, Korea
Omenn 2004, Proteomics, V4, I5, 1235-1240 Omenn 2004, Proteomics, V4, I5, 1235-1240
PAe000058
HUPO28_b1-CIT
Human
mzXML_format
(8.1 MB)
RAW_format
(7.3 MB)
Search_Results
(11.4 MB)
ProteinProphet_file
(0.1 MB)
README
HUPO plasma sample
HUPO Lab 28 is Pounds/Adkins/Rodland/Anderson, Pacific Northwest Natl Lab, USA
Omenn 2004, Proteomics, V4, I5, 1235-1240
PAe000059
HUPO28_b1-SERUM
Human
mzXML_format
(8.2 MB)
RAW_format
(7.4 MB)
Search_Results
(10.4 MB)
ProteinProphet_file
(0.1 MB)
README
HUPO plasma sample
HUPO Lab 28 is Pounds/Adkins/Rodland/Anderson, Pacific Northwest Natl Lab, USA
Omenn 2004, Proteomics, V4, I5, 1235-1240
PAe000060
HUPO28_b2-CIT
Human
mzXML_format
(40.9 MB)
RAW_format
(36.7 MB)
Search_Results
(36.7 MB)
ProteinProphet_file
(0.1 MB)
README
HUPO plasma sample
HUPO Lab 28 is Pounds/Adkins/Rodland/Anderson, Pacific Northwest Natl Lab, USA
Omenn 2004, Proteomics, V4, I5, 1235-1240
PAe000061
HUPO28_b2-SERUM
Human
mzXML_format
(41.4 MB)
RAW_format
(37.1 MB)
Search_Results
(37.6 MB)
ProteinProphet_file
(0.1 MB)
README
HUPO plasma sample
HUPO Lab 28 is Pounds/Adkins/Rodland/Anderson, Pacific Northwest Natl Lab, USA
Omenn 2004, Proteomics, V4, I5, 1235-1240
PAe000062
HUPO28_b3-CIT
Human
mzXML_format
(8.3 MB)
RAW_format
(7.5 MB)
Search_Results
(10.3 MB)
ProteinProphet_file
(0.1 MB)
README
HUPO plasma sample
HUPO Lab 28 is Pounds/Adkins/Rodland/Anderson, Pacific Northwest Natl Lab, USA
Omenn 2004, Proteomics, V4, I5, 1235-1240
PAe000063
HUPO28_b3-SERUM
Human
mzXML_format
(8.1 MB)
RAW_format
(7.3 MB)
Search_Results
(10.3 MB)
ProteinProphet_file
(0.1 MB)
README
HUPO plasma sample
HUPO Lab 28 is Pounds/Adkins/Rodland/Anderson, Pacific Northwest Natl Lab, USA
Omenn 2004, Proteomics, V4, I5, 1235-1240
064
HUPO28_Ref-CIT
Human
mzXML_format
(8.0 MB)
RAW_format
(7.2 MB)
Search_Results
(9.4 MB)
ProteinProphet_file
(0.0 MB)
README
HUPO plasma sample
HUPO Lab 28 is Pounds/Adkins/Rodland/Anderson, Pacific Northwest Natl Lab, USA
Omenn 2004, Proteomics, V4, I5, 1235-1240
PAe000065
HUPO28_Ref-SERUM
Human
mzXML_format
(7.8 MB)
RAW_format
(7.0 MB)
Search_Results
(9.2 MB)
ProteinProphet_file
(0.0 MB)
README
HUPO plasma sample
HUPO Lab 28 is Pounds/Adkins/Rodland/Anderson, Pacific Northwest Natl Lab, USA
Omenn 2004, Proteomics, V4, I5, 1235-1240
PAe000066
HUPO29_b1-CIT_1
Human
mzXML_format
(278.7 MB)
RAW_format
(340.3 MB)
Search_Results
(506.0 MB)
ProteinProphet_file
(0.1 MB)
README
HUPO plasma sample
HUPO Lab 29 is Qian/He, Beijing Institute of Radiation Medicine, Beijing, China
Omenn 2004, Proteomics, V4, I5, 1235-1240
PAe000067
HUPO29_b1-CIT_win1
Human
mzXML_format
(164.2 MB)
RAW_format
(148.5 MB)
Search_Results
(304.2 MB)
ProteinProphet_file
(0.4 MB)
README
HUPO plasma sample
HUPO Lab 29 is Qian/He, Beijing Institute of Radiation Medicine, Beijing, China
Omenn 2004, Proteomics, V4, I5, 1235-1240
PAe000068
HUPO29_b1-CIT_win2
Human
mzXML_format
(133.0 MB)
RAW_format
(121.5 MB)
Search_Results
(246.5 MB)
ProteinProphet_file
(0.9 MB)
README
HUPO plasma sample
HUPO Lab 29 is Qian/He, Beijing Institute of Radiation Medicine, Beijing, China
Omenn 2004, Proteomics, V4, I5, 1235-1240
PAe000130
HUPO29_b1-EDTA_1
Human
mzXML_format
(365.8 MB)
RAW_format
(331.0 MB)
Search_Results
(509.0 MB)
ProteinProphet_file
(0.3 MB)
README
HUPO plasma sample
HUPO Lab 29 is Qian/He, Beijing Institute of Radiation Medicine, Beijing, China
Omenn 2004, Proteomics, V4, I5, 1235-1240
PAe000131
HUPO29_b1-EDTA_win1
Human
mzXML_format
(196.3 MB)
RAW_format
(177.4 MB)
Search_Results
(482.8 MB)
ProteinProphet_file
(0.8 MB)
README
HUPO plasma sample
HUPO Lab 29 is Qian/He, Beijing Institute of Radiation Medicine, Beijing, China
Omenn 2004, Proteomics, V4, I5, 1235-1240
PAe000132
HUPO29_b1-EDTA_win2
Human
mzXML_format
(142.2 MB)
RAW_format
(139.7 MB)
Search_Results
(340.1 MB)
ProteinProphet_file
(0.5 MB)
README
HUPO plasma sample
HUPO Lab 29 is Qian/He, Beijing Institute of Radiation Medicine, Beijing, China
Omenn 2004, Proteomics, V4, I5, 1235-1240
PAe000133
HUPO29_b1-HEP
Human
mzXML_format
(313.3 MB)
RAW_format
(283.0 MB)
Search_Results
(473.2 MB)
ProteinProphet_file
(0.1 MB)
README
HUPO plasma sample
HUPO Lab 29 is Qian/He, Beijing Institute of Radiation Medicine, Beijing, China
Omenn 2004, Proteomics, V4, I5, 1235-1240
PAe000134
HUPO29_b1-SERUM
Human
mzXML_format
(352.2 MB)
RAW_format
(318.3 MB)
Search_Results
(546.3 MB)
ProteinProphet_file
(0.3 MB)
README
HUPO plasma sample
HUPO Lab 29 is Qian/He, Beijing Institute of Radiation Medicine, Beijing, China
Omenn 2004, Proteomics, V4, I5, 1235-1240
PAe000069
HUPO34
Human
mzXML_format
(1.3 GB)
RAW_format
(1.1 GB)
Search_Results
(2.1 GB)
ProteinProphet_file
(1.0 MB)
README
HUPO plasma sample
HUPO Lab 34 is Speicher, Wistar Institute, Philadelphia, PA, USA
Omenn 2004, Proteomics, V4, I5, 1235-1240
PAe000135
HUPO34_b1-SERUM
Human
mzXML_format
(8.3 GB)
RAW_format
(7.7 GB)
Search_Results
(4.1 GB)
ProteinProphet_file
(5.3 MB)
README
HUPO plasma sample
HUPO LAb 34 is Speicher, Wistar Institute, Philadelphia, PA, USA
Omenn 2004, Proteomics, V4, I5, 1235-1240
PAe000070
HUPO37_b1-HEP_2LCQ
Human
mzXML_format
(81.4 MB)
RAW_format
(72.7 MB)
Search_Results
(4.5 MB)
ProteinProphet_file
(0.0 MB)
README
HUPO plasma sample
HUPO Lab 37 is Tsugita/Hosokawa, Proteomics Research Lab, Tsukuba, Japan
Omenn 2004, Proteomics, V4, I5, 1235-1240
PAe000101
HUPO40
Human
mzXML_format
(973.9 MB)
RAW_format
(875.0 MB)
Search_Results
(286.6 MB)
ProteinProphet_file
(0.4 MB)
README
HUPO plasma sample
HUPO Lab 40 is Wang R, Mass Spec Proteomics Lab, Mount Sinai, New York, NY, USA
Omenn 2004, Proteomics, V4, I5, 1235-1240
PAe000040
ICAT-3A-P3
Human
mzXML_format
(431.8 MB)
Search_Results
(193.2 MB)
ProteinProphet_file
(0.0 MB)
README
chromatin-associated proteins induced by Myc oncoprotein expression in human B lymphocytes. Chromatin-enriched fractions labeled with ICAT.
Yuzuru Shiio
Shiio et al. 2003, J Am Soc Mass Spectrom. 2003 Jul;14(7):696-703.
PAe000041
ICAT-3A-S1
Human
mzXML_format
(993.9 MB)
Search_Results
(334.2 MB)
ProteinProphet_file
(0.3 MB)
README
soluble fractions
Yuzuru Shiio
PAe000042
ICAT-3B-P3
Human
mzXML_format
(443.5 MB)
Search_Results
(179.0 MB)
ProteinProphet_file
(0.1 MB)
README
chromatin-enriched fractions. labeled with old ICAT.
Yuzuru Shiio
PAe000043
ICAT-3B-S1
Human
mzXML_format
(1.9 GB)
Search_Results
(575.0 MB)
ProteinProphet_file
(0.4 MB)
README
soluble fractions. labeled with old ICAT.
Yuzuru Shiio
PAe000051
lgmem2
Human
mzXML_format
(542.8 MB)
RAW_format
(485.4 MB)
Search_Results
(200.1 MB)
ProteinProphet_file
(0.7 MB)
README
Human prostate cancer cell line: LNCaP (membrane); Microsomal preparation. Labeled with old ICAT.
Michael Wright
Wright ME et al. 2003. Genome Biol.;5(1):R4
PAe000005
LNCALcyto
Human
mzXML_format
(521.0 MB)
Search_Results
(101.2 MB)
ProteinProphet_file
(0.2 MB)
README
Human prostate cancer cell lines: LNCaP, CL-1, cytosolic. labeled with old ICAT
Biaoyang Lin, Lee Hood
Lin et al. 2005, Cancer Res. 2005 Apr 15;65(8):3081-91
PAe000006
LNCALmicrosomal
Human
mzXML_format
(428.0 MB)
Search_Results
(92.5 MB)
ProteinProphet_file
(0.2 MB)
README
Human prostate cancer cell lines: LNCaP, CL-1, microsomal. Labeled with old ICAT.
Biaoyang Lin, Lee Hood
Lin et al. 2005, Cancer Res. 2005 Apr 15;65(8):3081-91
PAe000007
LNCALnucl
Human
mzXML_format
(605.8 MB)
Search_Results
(100.8 MB)
ProteinProphet_file
(0.2 MB)
README
Human prostate cancer cell lines: LNCaP, CL-1, nuclear. Labeled with old ICAT.
Biaoyang Lin, Lee Hood
Lin et al. 2005, Cancer Res. 2005 Apr 15;65(8):3081-91
PAe000171
MicroProt
Human
mzXML_format
(50.9 GB)
Search_Results
(7.1 GB)
ProteinProphet_file
(1.9 MB)
README
From 2.5 liters of plasma pooled from dozens of normal patients the sample was extensively fractionated into 37,000 fractions and analyzed with a fleet of 38 Bruker ion trap mass spectrometers by GeneProt.
releasing the data from the Novartis-GeneProt collaboration. Contact: Manuel Peitsch
PAe000265
MicroProt2
Human
mzXML_format
(33.3 GB)
Search_Results
(7.4 GB)
ProteinProphet_file
(1.6 MB)
README
From 2.5 liters of plasma pooled from dozens of normal female patients the sample was extensively fractionated into 7,000 fractions and analyzed with a fleet of 38 Bruker ion trap mass spectrometers by GeneProt.
We thank Novartis for releasing the data from the Novartis-GeneProt collaboration. Contact: Manuel Peitsch
PAe000073
NIBSC_glyco_lcq
Human
mzXML_format
(1.3 GB)
Search_Results
(480.6 MB)
ProteinProphet_file
(1.4 MB)
README
HUPO sample NIBSC glycopeptide
HUPO Lab 2 is Aebersold Lab, Institute for Systems Biology, Seattle, WA
Omenn 2004, Proteomics, V4, I5, 1235-1240 Omenn 2004, Proteomics, V4, I5, 1235-1240
PAe000038
OPDHumanSiHa
Human
mzXML_format
(102.0 MB)
RAW_format
(91.1 MB)
Search_Results
(93.9 MB)
ProteinProphet_file
(0.2 MB)
README
SiHa human cell line used to model cervical cancer. Grown under normal conditions. No perturbation. RPC chromatography. ThermoFinnigan ESI-Ion Trap "Dexa XP Plus.
Mike Carlson (U Texas)
Prince, J, Carlson, M, Wang, R, Lu, P, and Marcotte E, 2004 Nature Biotechnology, 22(4):471
PAe000039
OPDHumanSqCC
Human
mzXML_format
(116.5 MB)
RAW_format
(103.8 MB)
Search_Results
(93.8 MB)
ProteinProphet_file
(0.2 MB)
README
SqCC human cell line used to model head and neck cancer. Grown under normal conditions. No perturbation.
Mike Carlson (U Texas)
Prince, J, Carlson, M, Wang, R, Lu, P, and Marcotte E, 2004 Nature Biotechnology, 22(4):471
PAe000115
PLC
Human
mzXML_format
(71.5 MB)
RAW_format
(64.6 MB)
Search_Results
(43.9 MB)
ProteinProphet_file
(0.2 MB)
README
Human Erythroleukemia K562 cell line
Katherine Resing (U Col), Meyer-Arendt K, Mendoza AM, Aveline-Wolf LD Jonscher KR, Pierce KG, Old WM, Cheung HT, Russell S, Wattawa JL, Goehle GR, Knight RD, Ahn NG.
Resing et al. 2004, Anal Chem. 2004 Jul 1;76(13):3556-68.
PAe000116
Q
Human
mzXML_format
(2.5 GB)
RAW_format
(2.3 GB)
Search_Results
(2.6 GB)
ProteinProphet_file
(6.6 MB)
README
Human
Katherine Resing (U Col), Meyer-Arendt K, Mendoza AM,
PAe000168
Qian
Human
mzXML_format
(5.9 GB)
Search_Results
(4.8 GB)
ProteinProphet_file
(7.3 MB)
README
Qian Plasma non alkylated samples
Weijun Qian (PNNL)
Qian et al., Mol Cell Proteomics. 2005 May;4(5):700-9
PAe000169
Qian_WQ
Human
mzXML_format
(1.3 GB)
Search_Results
(1.3 GB)
ProteinProphet_file
(3.7 MB)
README
Qian Plasma alkylated samples
Weijun Qian et al. (PNNL)
Qian et al., Mol Cell Proteomics. 2005 May;4(5):700-9
PAe000312
R
Human
mzXML_format
(2.0 GB)
RAW_format
(1.8 GB)
Search_Results
(2.6 GB)
ProteinProphet_file
(3.9 MB)
README
R
Katheryn Resing
PAe000002
raftapr
Human
mzXML_format
(264.6 MB)
Search_Results
(91.8 MB)
ProteinProphet_file
(0.2 MB)
README
Lipid Rafts prepared from Human Jurkat T-cell stimulated via T cell receptor/CD28 cross-linking and from control (unstimulated) cells. Labeled with old ICAT.
Priska von Haller, Eugene Yi, Samuel Donohoe, Julian Watts.
PAe000003
raftaug
Human
mzXML_format
(141.2 MB)
Search_Results
(33.7 MB)
ProteinProphet_file
(0.1 MB)
README
Lipid Rafts prepared from Human Jurkat T-cell stimulated via T cell receptor/CD28 cross-linking and from control (unstimulated) cells. Labeled with old ICAT.
Priska von Haller, Eugene Yi, Samuel Donohoe, Julian Watts
von Haller et al. 2003 Mol Cell Proteomics 2, 428-442 von Haller et al. 2003, Mol Cell Proteomics. 2003 Jul;2(7):426-7.
PAe000004
raftflow
Human
mzXML_format
(396.1 MB)
Search_Results
(124.2 MB)
ProteinProphet_file
(0.6 MB)
README
Flow through sample of Lipid Rafts prepared from Human Jurkat T-cell stimulated via T cell receptor/CD28 cross-linking and from control (unstimulated) cells. Labeled with old ICAT.
Priska von Haller, Eugene Yi, Samuel Donohoe, Julian Watts
von Haller et al. 2003 Mol Cell Proteomics 2, 428-442 von Haller et al. 2003, Mol Cell Proteomics. 2003 Jul;2(7):426-7.
PAe000026
Trex_1
Human
mzXML_format
(1.1 GB)
Search_Results
(132.6 MB)
ProteinProphet_file
(0.5 MB)
README
For identification of the TREX binding factor, two samples were prepared by DNA affinity chromatography using HeLa nuclear extracts. The first sample was purified using a TREX binding site column. The second sample was prepared using a mutated TREX binding site column. Proteins were differentially labeled with old ICAT reagents , combined, prepared for mass spectrometry, and analyzed on an ion trap mass spectrometer.
Jeff Ranish
Himeda et al. 2004, Mol Cell Biol. 2004 Mar;24(5):2132-43
PAe000316
Wilmarth_human_lens
Human
mzXML_format
(208.6 MB)
RAW_format
(186.8 MB)
Search_Results
(138.0 MB)
ProteinProphet_file
(0.5 MB)
README
Human lens experiment from P Wilmarth
Phillip Wilmarth
PAe000317
Wilmarth_human_saliva
Human
mzXML_format
(170.2 MB)
RAW_format
(153.9 MB)
Search_Results
(64.9 MB)
ProteinProphet_file
(0.2 MB)
README
Human saliva experiment from P Wilmarth
Phillip Wilmarth
PAe000318
Wilmarth_human_saliva2
Human
mzXML_format
(622.8 MB)
RAW_format
(559.3 MB)
Search_Results
(380.7 MB)
ProteinProphet_file
(1.3 MB)
README
Human saliva 2 experiment from P Wilmarth
Phillip Wilmarth
PAe000274
Wilmarth_human_serum1
Human
mzXML_format
(188.4 MB)
RAW_format
(169.2 MB)
Search_Results
(107.0 MB)
ProteinProphet_file
(0.7 MB)
README
Human serum experiment from P Wilmarth
Phillip Wilmarth
PAe000373
Brain_Cyto_UT
Mouse
mzXML_format
(1.4 GB)
RAW_format
(1.2 GB)
Search_Results
(459.9 MB)
ProteinProphet_file
(2.3 MB)
README
Brain Cytoplasmic Fraction - UT
Andrew Emili
PAe000305
brain_micro
Mouse
mzXML_format
(41.2 MB)
RAW_format
(36.6 MB)
Search_Results
(14.9 MB)
ProteinProphet_file
(0.1 MB)
README
Mouse Brain Microsomal
Daniel Martin
PAe000370
Brain_Micro_UT
Mouse
mzXML_format
(1.1 GB)
RAW_format
(970.7 MB)
Search_Results
(436.1 MB)
ProteinProphet_file
(1.3 MB)
README
Brain Microsomal Fraction - UT
Andrew Emili
PAe000359
Brain_Mito_UT
Mouse
mzXML_format
(1.3 GB)
RAW_format
(1.2 GB)
Search_Results
(526.0 MB)
ProteinProphet_file
(1.1 MB)
README
Brain Mitochondrial Fraction - UT
Andrew Emili
PAe000380
Brain_NUC_UT
Mouse
mzXML_format
(1.4 GB)
RAW_format
(1.2 GB)
Search_Results
(531.5 MB)
ProteinProphet_file
(1.6 MB)
README
Brain Nuclear Fraction - UT
Andrew Emili
PAe000272
BrainOctylGlucLTQ
Mouse
mzXML_format
(312.4 MB)
RAW_format
(293.2 MB)
Search_Results
(65.4 MB)
ProteinProphet_file
(0.6 MB)
README
Mouse brain octyl glucose fraction run on LTQ
Dan Martin
PAe000273
BrainOctylSolLCQ
Mouse
mzXML_format
(234.2 MB)
RAW_format
(208.5 MB)
Search_Results
(43.5 MB)
ProteinProphet_file
(0.2 MB)
README
Mouse Brain Octyl soluable fraction on LCQ
Dan Martin
PAe000268
BrainWaterSolLCQ
Mouse
mzXML_format
(623.0 MB)
RAW_format
(557.3 MB)
Search_Results
(116.0 MB)
ProteinProphet_file
(0.7 MB)
README
Mouse brain soluable fraction on LCQ
Dan Martin
PAe000271
BrainWaterSolLTQ
Mouse
mzXML_format
(1.3 GB)
RAW_format
(1.2 GB)
Search_Results
(242.4 MB)
ProteinProphet_file
(1.2 MB)
README
Mouse brain water soluable fraction run on LTQ
Dan Martin
PAe000293
cytoplasmic_2004-07-27
Mouse
mzXML_format
(149.2 MB)
Search_Results
(83.8 MB)
ProteinProphet_file
(0.4 MB)
README
cytoplasmic_2004-07-27
Rong Wang
PAe000292
cytoplasmic_2004-07-28
Mouse
mzXML_format
(140.4 MB)
Search_Results
(81.2 MB)
ProteinProphet_file
(0.3 MB)
README
cytoplasmic_2004-07-28
Rong Wang
PAe000290
cytoplasmic_2004-07-30
Mouse
mzXML_format
(135.6 MB)
Search_Results
(80.9 MB)
ProteinProphet_file
(0.3 MB)
README
cytoplasmic_2004-07-30
Rong Wang
PAe000298
cytoplasmic_2004-09-28
Mouse
mzXML_format
(130.9 MB)
Search_Results
(79.0 MB)
ProteinProphet_file
(0.4 MB)
README
cytoplasmic_2004-09-28
Rong Wang
PAe000379
Heart_Cyto_UT
Mouse
mzXML_format
(1.1 GB)
RAW_format
(948.8 MB)
Search_Results
(405.2 MB)
ProteinProphet_file
(1.2 MB)
README
Heart Cytoplasmic Fraction - UT
Andrew Emili
PAe000303
heart_micro
Mouse
mzXML_format
(45.5 MB)
RAW_format
(40.4 MB)
Search_Results
(11.3 MB)
ProteinProphet_file
(0.1 MB)
README
Mouse Heart Microsomal
Daniel Martin
PAe000354
Heart_Micro_UT
Mouse
mzXML_format
(1.1 GB)
RAW_format
(952.6 MB)
Search_Results
(402.5 MB)
ProteinProphet_file
(1.0 MB)
README
Heart Microsomal Fraction - UT
Andrew Emili
PAe000353
Heart_Mito_UT
Mouse
mzXML_format
(1.4 GB)
RAW_format
(1.3 GB)
Search_Results
(497.8 MB)
ProteinProphet_file
(0.9 MB)
README
Heart Mitochondrial Fraction - UT
Andrew Emili
PAe000416
her-2_normal
Mouse
mzXML_format
(3.9 GB)
Search_Results
(1.5 GB)
ProteinProphet_file
(4.0 MB)
README
Normal Her2neu analysis
APaulovich
PAe000418
her-2_tumor
Mouse
mzXML_format
(4.2 GB)
Search_Results
(1.6 GB)
ProteinProphet_file
(4.7 MB)
README
Tumor Her2neu analysis
APaulovich
PAe000356
her2_normal
Mouse
mzXML_format
(3.9 GB)
Search_Results
(668.2 MB)
ProteinProphet_file
(6.0 MB)
README
Normal Her2neu analysis
Amanda Paulovich
PAe000377
her2_tumor
Mouse
mzXML_format
(4.2 GB)
Search_Results
(694.1 MB)
ProteinProphet_file
(7.2 MB)
README
Tumor Her2neu analysis
Amanda Paulovich
PAe000355
Kidney_Cyto_UT
Mouse
mzXML_format
(907.2 MB)
RAW_format
(823.0 MB)
Search_Results
(342.0 MB)
ProteinProphet_file
(1.1 MB)
README
Kidney Cytoplasmic Fraction - UT
Andrew Emili
PAe000304
kidney_micro
Mouse
mzXML_format
(195.8 MB)
RAW_format
(174.8 MB)
Search_Results
(47.9 MB)
ProteinProphet_file
(0.4 MB)
README
Mouse Kidney Microsomal
Daniel Martin
PAe000368
Kidney_Micro_UT
Mouse
mzXML_format
(1.2 GB)
RAW_format
(1.0 GB)
Search_Results
(418.8 MB)
ProteinProphet_file
(1.1 MB)
README
Kidney Microsomal Fraction - UT
Andrew Emili
PAe000358
Kidney_Mito_UT
Mouse
mzXML_format
(1.0 GB)
RAW_format
(916.0 MB)
Search_Results
(417.6 MB)
ProteinProphet_file
(1.1 MB)
README
Kidney Mitochondrial Fraction - UT
Andrew Emili
PAe000360
Kidney_NUC_UT
Mouse
mzXML_format
(1.5 GB)
RAW_format
(1.4 GB)
Search_Results
(540.0 MB)
ProteinProphet_file
(1.5 MB)
README
Kidney Nuclear Fraction - UT
Andrew Emili
PAe000269
KidneyAnionEX
Mouse
mzXML_format
(607.6 MB)
RAW_format
(575.0 MB)
Search_Results
(321.6 MB)
ProteinProphet_file
(0.9 MB)
README
Mouse Kidney soluable fraction on LCQ
Dan Martin
PAe000270
KidneyAnionLTQ
Mouse
mzXML_format
(269.6 MB)
RAW_format
(252.4 MB)
Search_Results
(107.0 MB)
ProteinProphet_file
(0.4 MB)
README
Mouse Kidney anion fraction on LTQ
Dan Martin
PAe000364
Liver_Cyto_UT
Mouse
mzXML_format
(991.3 MB)
RAW_format
(886.5 MB)
Search_Results
(395.8 MB)
ProteinProphet_file
(1.0 MB)
README
Liver Cytoplasmic Fraction - UT
Andrew Emili
PAe000376
Liver_Micro_UT
Mouse
mzXML_format
(1.1 GB)
RAW_format
(973.6 MB)
Search_Results
(396.2 MB)
ProteinProphet_file
(0.9 MB)
README
Liver Microsomal Fraction - UT
Andrew Emili
PAe000369
Liver_Mito_UT
Mouse
mzXML_format
(990.1 MB)
RAW_format
(885.6 MB)
Search_Results
(456.7 MB)
ProteinProphet_file
(1.1 MB)
README
Liver Mitochondrial Fraction - UT
Andrew Emili
PAe000372
Liver_NE_UT
Mouse
mzXML_format
(200.3 MB)
RAW_format
(178.5 MB)
Search_Results
(39.3 MB)
ProteinProphet_file
(0.3 MB)
README
Liver NE fraction - UT
Andrew Emili
PAe000375
Liver_NUC_UT
Mouse
mzXML_format
(1.3 GB)
RAW_format
(1.2 GB)
Search_Results
(541.0 MB)
ProteinProphet_file
(1.6 MB)
README
Liver Nuclear Fraction - UT
Andrew Emili
PAe000362
Lung_Cyto_UT
Mouse
mzXML_format
(1.1 GB)
RAW_format
(999.8 MB)
Search_Results
(523.8 MB)
ProteinProphet_file
(1.4 MB)
README
Lung Cytoplasmic Fraction - UT
Andrew Emili
PAe000363
Lung_Micro_UT
Mouse
mzXML_format
(1.1 GB)
RAW_format
(963.9 MB)
Search_Results
(434.8 MB)
ProteinProphet_file
(1.7 MB)
README
Lung Microsomal Fraction - UT
Andrew Emili
PAe000357
Lung_Mito_UT
Mouse
mzXML_format
(1.3 GB)
RAW_format
(1.2 GB)
Search_Results
(422.3 MB)
ProteinProphet_file
(1.1 MB)
README
Lung Mitochondrial Fraction - UT
Andrew Emili
PAe000371
Lung_NE_UT
Mouse
mzXML_format
(727.3 MB)
RAW_format
(648.3 MB)
Search_Results
(277.8 MB)
ProteinProphet_file
(1.4 MB)
README
Lung NE fraction - UT
Andrew Emili
PAe000374
Lung_NUC_UT
Mouse
mzXML_format
(735.0 MB)
RAW_format
(656.0 MB)
Search_Results
(264.3 MB)
ProteinProphet_file
(0.8 MB)
README
Lung Nuclear Fraction - UT
Andrew Emili
PAe000297
MannMouseLiver
Mouse
mzXML_format
(9.6 GB)
RAW_format
(35.0 GB)
Search_Results
(2.2 GB)
ProteinProphet_file
(8.1 MB)
README
Mann Mouse Liver
Matthias Mann
PAe000289
mm_dba2_cyto
Mouse
mzXML_format
(372.3 MB)
RAW_format
(333.0 MB)
Search_Results
(126.6 MB)
ProteinProphet_file
(1.1 MB)
README
Mouse DBA2 Cyto
Daniel Martin
PAe000291
mm_dba2_HMP
Mouse
mzXML_format
(715.2 MB)
RAW_format
(639.2 MB)
Search_Results
(192.1 MB)
ProteinProphet_file
(1.7 MB)
README
Mouse DBA2 HMP
Daniel Martin
PAe000295
mm_dba2_micro
Mouse
mzXML_format
(341.5 MB)
RAW_format
(305.8 MB)
Search_Results
(145.2 MB)
ProteinProphet_file
(1.3 MB)
README
Mouse DBA2 Micro
Daniel Martin
PAe000301
mm_dba2_nucleus
Mouse
mzXML_format
(485.0 MB)
RAW_format
(436.5 MB)
Search_Results
(122.5 MB)
ProteinProphet_file
(1.3 MB)
README
Mouse DBA2 Nucleus
Daniel Martin
PAe000288
mm_liver_organelle
Mouse
mzXML_format
(659.1 MB)
RAW_format
(458.7 MB)
Search_Results
(123.3 MB)
ProteinProphet_file
(0.7 MB)
README
Mouse Liver Organelle
Daniel Martin
PAe000308
mm_liver_organelle-20_9-10
Mouse
mzXML_format
(107.8 MB)
RAW_format
(97.3 MB)
Search_Results
(48.1 MB)
ProteinProphet_file
(0.3 MB)
README
Mouse Liver Organelle 20_9-10
Daniel Martin
PAe000309
mm_liver_organelle-25_1
Mouse
mzXML_format
(376.4 MB)
RAW_format
(349.6 MB)
Search_Results
(82.1 MB)
ProteinProphet_file
(0.3 MB)
README
Mouse Liver Organelle 25_1
Daniel Martin
PAe000417
mm_liver_organelle-pre5_6
Mouse
mzXML_format
(251.7 MB)
RAW_format
(234.6 MB)
Search_Results
(37.4 MB)
ProteinProphet_file
(0.1 MB)
README
Mouse Liver Organelle pre5_6
DMartin
PAe000306
mm_liver_organelle-pre7
Mouse
mzXML_format
(135.7 MB)
RAW_format
(121.0 MB)
Search_Results
(30.4 MB)
ProteinProphet_file
(0.2 MB)
README
Mouse Liver Organelle pre7
Daniel Martin
PAe000300
mm_testes
Mouse
mzXML_format
(1.3 GB)
RAW_format
(1.1 GB)
Search_Results
(472.3 MB)
ProteinProphet_file
(2.1 MB)
README
Mouse testes
Daniel Martin
PAe000320
MmPlasIPAS11_LateStgPaCa
Mouse
mzXML_format
(11.6 GB)
Search_Results
(5.0 MB)
ProteinProphet_file
(0.0 MB)
README
MmPlasma IPAS11 late stage pancreatic cancer vs normal
Sam Hanash
PAe000323
MmPlasIPAS14_LateStgCaCo_Hvd
Mouse
mzXML_format
(15.9 GB)
Search_Results
(5.1 MB)
ProteinProphet_file
(0.0 MB)
README
MmPlasma IPAS14 late stage colon cancer vs normal Harvard
Sam Hanash
PAe000322
MmPlasIPAS17_LateStgOvCa
Mouse
mzXML_format
(28.4 GB)
Search_Results
(4.7 MB)
ProteinProphet_file
(0.0 MB)
README
MmPlasma IPAS17 late stage ovarian cancer vs normal
Sam Hanash
PAe000321
MmPlasIPAS20_2_LateStgBrCa
Mouse
mzXML_format
(31.8 GB)
Search_Results
(6.6 MB)
ProteinProphet_file
(0.0 MB)
README
MmPlasma IPAS20_2 late stage breast cancer vs normal
Sam Hanash
PAe000302
nuclear_2004-09-20
Mouse
mzXML_format
(120.8 MB)
Search_Results
(75.6 MB)
ProteinProphet_file
(0.4 MB)
README
nuclear_2004-09-20
Rong Wang
PAe000299
nuclear_2004-09-21
Mouse
mzXML_format
(117.7 MB)
Search_Results
(75.7 MB)
ProteinProphet_file
(0.4 MB)
README
nuclear_2004-09-21
Rong Wang
PAe000294
nuclear_2004-09-23
Mouse
mzXML_format
(117.9 MB)
Search_Results
(74.6 MB)
ProteinProphet_file
(0.4 MB)
README
nuclear_2004-09-23
Rong Wang
PAe000296
nuclear_2004-09-24
Mouse
mzXML_format
(117.4 MB)
Search_Results
(74.5 MB)
ProteinProphet_file
(0.4 MB)
README
nuclear_2004-09-24
Rong Wang
PAe000382
org_m1
Mouse
mzXML_format
(552.7 MB)
Search_Results
(12.3 MB)
ProteinProphet_file
(0.3 MB)
README
Mock experiment 1
Wei Yan
PAe000378
org_m2
Mouse
mzXML_format
(539.3 MB)
Search_Results
(11.9 MB)
ProteinProphet_file
(0.3 MB)
README
Mock experiment 2
Wei Yan
PAe000365
org_t
Mouse
mzXML_format
(889.3 MB)
Search_Results
(14.3 MB)
ProteinProphet_file
(0.4 MB)
README
Thapsigargin-treated experiment
Wei Yan
PAe000361
Placenta_Cyto_UT
Mouse
mzXML_format
(1.1 GB)
RAW_format
(990.0 MB)
Search_Results
(383.9 MB)
ProteinProphet_file
(1.3 MB)
README
Placenta Cytoplasmic Fraction - UT
Andrew Emili
PAe000381
Placenta_Micro_UT
Mouse
mzXML_format
(958.1 MB)
RAW_format
(877.4 MB)
Search_Results
(351.5 MB)
ProteinProphet_file
(1.2 MB)
README
Placenta Microsomal Fraction - UT
Andrew Emili
PAe000366
Placenta_Mito_UT
Mouse
mzXML_format
(1.4 GB)
RAW_format
(1.2 GB)
Search_Results
(484.2 MB)
ProteinProphet_file
(0.9 MB)
README
Placenta Mitochondrial Fraction - UT
Andrew Emili
PAe000367
Placenta_NUC_UT
Mouse
mzXML_format
(1.6 GB)
RAW_format
(1.4 GB)
Search_Results
(516.2 MB)
ProteinProphet_file
(1.7 MB)
README
Placenta Nuclear Fraction - UT
Andrew Emili
PAe000307
RBC_membrane
Mouse
mzXML_format
(217.3 MB)
RAW_format
(192.2 MB)
Search_Results
(44.8 MB)
ProteinProphet_file
(0.4 MB)
README
Mouse Red Blood Cell Membranes
Daniel Martin
PAe000285
FFE2_LTQ
Streptococcus
mzXML_format
(1.9 GB)
Search_Results
(109.9 MB)
ProteinProphet_file
(0.1 MB)
README
Streptococcus pyogenenes FFE LTQ exp
Johan Malmstrom
PAe000283
StrepPyogenes_FFE2_LTQ-FT
Streptococcus
mzXML_format
(47.1 MB)
Search_Results
(32.7 MB)
ProteinProphet_file
(0.1 MB)
README
Streptococcus pyogenenes FFE LTQ-FT exp
Johan Malmstrom
PAe000284
StrepPyogenes_LTQ1_TC
Streptococcus
mzXML_format
(138.5 MB)
Search_Results
(120.5 MB)
ProteinProphet_file
(0.1 MB)
README
Streptococcus pyogenenes LTQ TimeCourse
Johan Malmstrom
PAe000287
StrepPyogenes_LTQ2_DR_TC
Streptococcus
mzXML_format
(400.3 MB)
Search_Results
(272.3 MB)
ProteinProphet_file
(0.3 MB)
README
Streptococcus pyogenenes LTQ DoseResp TimeCourse
Johan Malmstrom
PAe000286
StrepPyogenes_OGE_LTQ
Streptococcus
mzXML_format
(2.2 GB)
Search_Results
(405.1 MB)
ProteinProphet_file
(0.4 MB)
README
Streptococcus pyogenenes LTQ OffGel
Johan Malmstrom
PAe000084
Ac30
Yeast
mzXML_format
(1.9 GB)
RAW_format
(1.7 GB)
Search_Results
(1.2 GB)
sequest_params
ProteinProphet_file
(1.3 MB)
README
Catalogue changes in budding yeast (S. cerevisiae) protein expression following brief treatment with mating hormone, with the endpoint of identifying translationally controlled proteins. baseline (light ICAT label) is protein from an asynchrnous culture
Serikawa KA (UW), Xu XL (UW), MacKay VL (UW), Law GL (UW), Zong Q (UW), Zhao LP (UW), Bumgarner R (UW), Morris DR (UW)
Serikawa, Xu, MacKay, et al. (2003)
PAe000147
APEX_04-22
Yeast
mzXML_format
(119.3 MB)
Search_Results
(201.6 MB)
sequest_params
ProteinProphet_file
(0.3 MB)
README
04-22-05_YPD041805_N14_14_45_v0.4
Peng Lu
PAe000140
APEX_04-23
Yeast
mzXML_format
(124.7 MB)
Search_Results
(207.9 MB)
sequest_params
ProteinProphet_file
(0.4 MB)
README
04-23-05_YPD041805_N14_14_45_v0.4
Peng Lu (UT)
PAe000156
APEX_04-24
Yeast
mzXML_format
(109.8 MB)
Search_Results
(188.1 MB)
sequest_params
ProteinProphet_file
(0.3 MB)
README
04-24-05_YPD041805_N14_14_45_v0.4
Peng Lu (UT)
PAe000154
APEX_04-28
Yeast
mzXML_format
(130.2 MB)
Search_Results
(218.2 MB)
sequest_params
ProteinProphet_file
(0.4 MB)
README
04-28-05_YPD041805_N14_14_45_v0.4
Peng Lu (UT)
PAe000144
APEX_04-30
Yeast
mzXML_format
(129.9 MB)
Search_Results
(220.0 MB)
sequest_params
ProteinProphet_file
(0.3 MB)
README
04-30-05_YPD041805_N14_14_45_v0.4
Peng Lu (UT)
PAe000146
cdc15_cdc23_newICAT
Yeast
mzXML_format
(977.3 MB)
Search_Results
(811.3 MB)
sequest_params
ProteinProphet_file
(0.9 MB)
README
cdc15(light) vs. cdc23(heavy) using the (new) cleavable ICAT reagent
Brian Raught (ISB)
PAe000076
cdc15_cdc23_oldICAT
Yeast
mzXML_format
(2.2 GB)
Search_Results
(573.9 MB)
sequest_params
ProteinProphet_file
(0.6 MB)
README
S. cerevisiae
Brian Raught
PAe000077
cdc15_cdc23_QTOFB
Yeast
mzXML_format
(201.0 MB)
Search_Results
(79.4 MB)
sequest_params
ProteinProphet_file
(0.2 MB)
README
S. cerevisiae
Brian Raught
PAe000164
cdc23_amf_newICAT
Yeast
mzXML_format
(949.4 MB)
RAW_format
(851.7 MB)
Search_Results
(647.5 MB)
sequest_params
ProteinProphet_file
(0.8 MB)
README
cdc23(light) vs. alpha mating factor arrest (amf:heavy) with CL-ICAT
Brian Raught (ISB)
PAe000141
Comp12vs12sizefrac
Yeast
mzXML_format
(125.1 MB)
RAW_format
(116.9 MB)
Search_Results
(138.2 MB)
sequest_params
ProteinProphet_file
(1.2 MB)
README
Comp12vs12sizefrac
Dan Martin (ISB)
PAe000125
Comp12vs12standSCX
Yeast
mzXML_format
(137.3 MB)
RAW_format
(123.0 MB)
Search_Results
(151.7 MB)
sequest_params
ProteinProphet_file
(1.1 MB)
README
Yeast samples used in testing fraction on LCQ.
Dan Martin
PAe000079
contFFE2Murea
Yeast
mzXML_format
(672.4 MB)
RAW_format
(166.0 MB)
Search_Results
(509.1 MB)
sequest_params
ProteinProphet_file
(0.6 MB)
README
Free flow electrophoresis yeast labeled with acid cleavable ICAT
Floyd Kregenow, Ruedi Aebersold
PAe000167
FFEY1
Yeast
mzXML_format
(485.5 MB)
RAW_format
(347.0 MB)
Search_Results
(254.0 MB)
sequest_params
ProteinProphet_file
(0.5 MB)
README
FFEYeast 1
Ruedi Aebersold and Floyd Kregenow (ISB)
PAe000081
FFEY1Scx
Yeast
mzXML_format
(41.4 MB)
Search_Results
(31.2 MB)
sequest_params
ProteinProphet_file
(0.2 MB)
README
Free flow electrophoresis yeast
Floyd Kregenow, Ruedi Aebersold
PAe000161
FFEY2
Yeast
mzXML_format
(470.1 MB)
Search_Results
(281.5 MB)
sequest_params
ProteinProphet_file
(1.1 MB)
README
Free flow electrophoresis yeast test 2
nd Floyd Kregenow (ISB)
PAe000139
gel_msms
Yeast
mzXML_format
(1.5 GB)
RAW_format
(1.3 GB)
Search_Results
(1.2 GB)
sequest_params
ProteinProphet_file
(2.3 MB)
README
gel_msms
Yuen Ho, Albrecht Gruhler, Adrian Heilbut, Gary D. Bader, Lynda Moore,et al.
Ho et al. 2002
PAe000151
gricat
Yeast
mzXML_format
(258.7 MB)
RAW_format
(177.5 MB)
Search_Results
(72.4 MB)
sequest_params
ProteinProphet_file
(0.2 MB)
README
gricat
Jeff Ranish, Trey Ideker (ISB)
Ideker et al. 2001, Science. 2001 May 4;292(5518):929-34.
PAe000165
ipg_ief
Yeast
mzXML_format
(607.5 MB)
RAW_format
(548.5 MB)
Search_Results
(480.9 MB)
sequest_params
ProteinProphet_file
(1.0 MB)
README
exp 5: IPG IEF of Multidimensional LC and gel MS/MS study
Breci L, Hattrup E, Keeler M, Letarte J, Johnson R, Haynes PA.
Breci et al. (2005)
PAe000166
mudpit
Yeast
mzXML_format
(175.5 MB)
RAW_format
(158.4 MB)
Search_Results
(142.1 MB)
sequest_params
ProteinProphet_file
(0.5 MB)
README
exp 1: mudpit
Breci L, Hattrup E, Keeler M, Letarte J, Johnson R, Haynes PA.
Breci et al. (2005)
PAe000149
opd00034_YEAST
Yeast
mzXML_format
(107.3 MB)
RAW_format
(95.7 MB)
Search_Results
(113.8 MB)
sequest_params
ProteinProphet_file
(0.3 MB)
README
OPD00034 Yeast
Peng Lu
PAe000120
opd00035_YEAST
Yeast
mzXML_format
(105.9 MB)
RAW_format
(94.5 MB)
Search_Results
(111.0 MB)
sequest_params
ProteinProphet_file
(0.3 MB)
README
DBY8724 yeast cells cultured in YPD medium at 30 deg C (OD600 = 0.8)
Peng Lu (UT, Austin)
Prince, J, Carlson, M, Wang, R, Lu, P, and Marcotte E, 2004 Nature Biotechnology, 22(4):471
PAe000138
peroximal_clICAT
Yeast
mzXML_format
(901.5 MB)
Search_Results
(274.5 MB)
sequest_params
ProteinProphet_file
(0.3 MB)
README
peroximal_clICAT
M. Marelli
Marelli et al. 2004, J Cell Biol. 2004 Dec 20;167(6):1099-112
PAe000150
peroximalPrep0702
Yeast
mzXML_format
(669.7 MB)
Search_Results
(115.0 MB)
sequest_params
ProteinProphet_file
(0.2 MB)
README
peroximalPrep0702
Marcelli Marelli et al (ISB)
Marelli et al. 2004, J Cell Biol. 2004 Dec 20;167(6):1099-112
PAe000083
PeteryeastIcatstdFFE
Yeast
mzXML_format
(3.2 GB)
Search_Results
(478.4 MB)
sequest_params
ProteinProphet_file
(0.5 MB)
README
Free flow electrophoresis yeast labeled with acid cleavable ICAT
Floyd Kregenow, Ruedi Aebersold
PAe000128
PvM1
Yeast
mzXML_format
(58.7 MB)
Search_Results
(12.4 MB)
sequest_params
ProteinProphet_file
(0.1 MB)
README
Yeast: identification of peroxisomal proteins with subcellular fractionation and tandem mass spectrometry. ICAT labeled peptides.
lli M, Smith JJ, Jung S, Yi E, Nesvizhskii AI, Christmas RH, Saleem RA, Tam YY, Fagarasanu A, Goodlett DR, Aebersold R, Rachubinski RA, Aitchison JD.
Marelli et al. 2004, J Cell Biol. 2004 Dec 20;167(6):1099-112
PAe000157
pxproteome
Yeast
mzXML_format
(378.7 MB)
Search_Results
(83.7 MB)
sequest_params
ProteinProphet_file
(0.2 MB)
README
peroxisomal proteomics
Marcello Marelli et al. (ISB)
Marelli et al. 2004, J Cell Biol. 2004 Dec 20;167(6):1099-112
PAe000160
rp_int_selected
Yeast
mzXML_format
(221.9 MB)
RAW_format
(200.6 MB)
Search_Results
(218.2 MB)
sequest_params
ProteinProphet_file
(0.7 MB)
README
exp 3: MSMS RP intensity selected of a Multidimensional LC and gel MS/MS study
Breci L, Hattrup E, Keeler M, Letarte J, Johnson R, Haynes PA. (University of Arizona)
Breci et al. (2005)
PAe000162
rp_mass_selected
Yeast
mzXML_format
(87.1 MB)
RAW_format
(77.2 MB)
Search_Results
(247.7 MB)
sequest_params
ProteinProphet_file
(0.7 MB)
README
exp 2: MSMS RP mass selected
Breci L, Hattrup E, Keeler M, Letarte J, Johnson R, Haynes PA.
Breci et al. (2005)
PAe000158
sdspage
Yeast
mzXML_format
(433.0 MB)
RAW_format
(389.2 MB)
Search_Results
(322.7 MB)
sequest_params
ProteinProphet_file
(0.9 MB)
README
exp 4: SDSPAGE
Paul Haynes et al. (UT)
Breci et al. (2005)
PAe000093
T00
Yeast
mzXML_format
(1.3 GB)
Search_Results
(365.1 MB)
sequest_params
ProteinProphet_file
(0.6 MB)
README
yeast cell-cycle experiment
Mark Flory
PAe000094
T30
Yeast
mzXML_format
(1.4 GB)
Search_Results
(284.3 MB)
sequest_params
ProteinProphet_file
(0.5 MB)
README
yeast cell-cycle experiment
Mark Flory
PAe000095
T50
Yeast
mzXML_format
(2.2 GB)
Search_Results
(477.7 MB)
sequest_params
ProteinProphet_file
(0.5 MB)
README
yeast cell-cycle experiment
Mark Flory
PAe000148
TSAAT000c
Yeast
mzXML_format
(2.1 GB)
Search_Results
(1.1 GB)
sequest_params
ProteinProphet_file
(1.4 MB)
README
TSAA time 0 experiment cleavable ICAT
Mark Flory, Ruedi Aebersold et al. (ISB)
MacKay et al. (2004)
PAe000086
TSAAT030c
Yeast
mzXML_format
(1.6 GB)
RAW_format
(1.4 GB)
Search_Results
(1.2 GB)
sequest_params
ProteinProphet_file
(1.3 MB)
README
TSAA time 30 experiment cleavable ICAT
Mark Flory, Ruedi Aebersold et al. (ISB)
MacKay et al. (2004)
PAe000159
TSAAT060c
Yeast
mzXML_format
(1.7 GB)
Search_Results
(978.2 MB)
sequest_params
ProteinProphet_file
(1.1 MB)
README
TSAA time 60 experiment cleavable ICAT
Mark Flory, Ruedi Aebersold et al. (ISB)
MacKay et al. (2004)
PAe000088
TSAAT090c
Yeast
mzXML_format
(1.7 GB)
RAW_format
(1.5 GB)
Search_Results
(999.3 MB)
sequest_params
ProteinProphet_file
(1.5 MB)
README
TSAA time 90 experiment cleavable ICAT
Mark Flory, Ruedi Aebersold et al. (ISB)
MacKay et al. (2004)
PAe000089
TSAAT120c
Yeast
mzXML_format
(2.2 GB)
RAW_format
(1.9 GB)
Search_Results
(820.6 MB)
sequest_params
ProteinProphet_file
(1.1 MB)
README
TSAA time 120 experiment cleavable ICAT
Mark Flory, Ruedi Aebersold et al. (ISB)
MacKay et al. (2004)
PAe000124
TSAAxT000old
Yeast
mzXML_format
(1.5 GB)
Search_Results
(462.2 MB)
sequest_params
ProteinProphet_file
(0.5 MB)
README
Yeast test experiment.
Mark Flory
MacKay et al. (2004)
PAe000145
yeast
Yeast
mzXML_format
(651.7 MB)
RAW_format
(587.1 MB)
Search_Results
(759.6 MB)
sequest_params
ProteinProphet_file
(1.9 MB)
README
yeast
Steven Gygi et al. (Harvard)
PAe000324
yeast_cell_lysate
Yeast
mzXML_format
(3.5 GB)
RAW_format
(3.3 GB)
Search_Results
(4.0 GB)
sequest_params
ProteinProphet_file
(5.3 MB)
README
yeast_quality_control
Amanda Paulovich
Paulovich et al. (2006)
PAe000142
YeastSCXReps
Yeast
mzXML_format
(656.9 MB)
RAW_format
(585.6 MB)
Search_Results
(443.9 MB)
sequest_params
ProteinProphet_file
(0.8 MB)
README
Yeast SCX Replicate Runs
S. Markey
Maynard et al. (2004)
PAe000155
YM_N14N15_DAYGly
Yeast
mzXML_format
(124.2 MB)
Search_Results
(206.7 MB)
sequest_params
ProteinProphet_file
(0.3 MB)
README
6-22-04-YM_N14N15_DAYGly040704_14_45_v0.4
Peng Lu (UT)
PAe000153
YM_N14N15_DAYSer
Yeast
mzXML_format
(124.9 MB)
Search_Results
(208.7 MB)
sequest_params
ProteinProphet_file
(0.3 MB)
README
6-21-04-YM_N14N15_DAYSer040704_14_45_v0.4
Peng Lu (UT)
PAe000143
YM_N14N15_SCYGly
Yeast
mzXML_format
(115.1 MB)
Search_Results
(192.5 MB)
sequest_params
ProteinProphet_file
(0.3 MB)
README
6-23-04_YM_N14N15_SCYGly040704_14_45_v0.4
Peng Lu (UT)
PAe000163
YM_N14N15_SCYSer
Yeast
mzXML_format
(116.7 MB)
Search_Results
(195.5 MB)
sequest_params
ProteinProphet_file
(0.4 MB)
README
6-24-04_YM_N14N15_SCYSer040704_14_45_v0.4
Peng Lu (UT)
Prince, J, Carlson, M, Wang, R, Lu, P, and Marcotte E, 2004 Nature Biotechnology, 22(4):471