Submissions to PeptideAtlas

Thank you for your interest in contributing to the PeptideAtlas database. Please submit your MS/MS or SRM dataset with all of the mass spectrometer output files, either in their native format (e.g., .raw, .wiff, .d, etc.) or in mzXML or mzML formats.

SRM data must be accompanied by a transition list in mProphet format, as illustrated in this template.

The spectra will then be processed by the PeptideAtlas curators to ensure consistency throughout PeptideAtlas.

Please submit your data via the new submission mechanism:

PeptideAtlas is a part of the ProteomeXchange Consortium. Official ProteomeXchange submission datasets should be submitted directly to PRIDE. Other data may also be submitted to Tranche.

If you have trouble or questions submitting your data, please contact us via our feedback form.