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PeptideAtlas Publications
If you make use of any data or results from the PeptideAtlas project in a
publication, please cite one or more of our PeptideAtlas papers:
PeptideAtlas Resource 2008
Eric W Deutsch, Henry Lam & Ruedi Aebersold:
PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows ,
EMBO reports 9, 5, 429–434 (2008) -
[PDF].
Mouse Plasma PeptideAtlas
Zhang, Q., Menon, R, Deutsch, E. W., Pitteri, S. J., Faca, V. M., Wang, H., Newcomb, L. F., DePinho, R. A., Bardeesy, N., Dinulescu, D., Hung, K. E., Kucherlapati, R., Jacks, T., Politi, K., Aebersold, R., Omenn, G. S., States, D. J., Hanash, S. M.:
A Mouse Plasma Peptide Atlas as a Resource for Disease Proteomics ,
Genome Biology, 9, 6, R93 (2008) -
[PDF].
Halobacterium PeptideAtlas
Phu T. Van, Amy K. Schmid, Nichole L. King, Amardeep Kaur, Min Pan, Kenia Whitehead, Tie Koide, Marc T. Facciotti, Young Ah Goo, Eric W. Deutsch, David J. Reiss, Parag Mallick, Nitin S. Baliga:
Halobacterium salinarum NRC-1 PeptideAtlas: Toward Strategies for Targeted Proteomics and Improved Proteome Coverage
,
J. Proteome Res.; 2008; ASAP Article; DOI: 10.1021/pr800031f.
Human Plasma PeptideAtlas
Eric W. Deutsch, Jimmy K. Eng, Hui Zhang, Nichole L. King, Alexey I. Nesvizhskii,
Biaoyang Lin, Hookeun Lee, Eugene C. Yi, Reto Ossola, and Ruedi Aebersold:
"Human Plasma PeptideAtlas",
Proteomics. 2005 Aug;5(13):3497-500 -
[PDF]
Yeast (S. cerevisiae) PeptideAtlas
Nichole L. King, Deutsch EW, Ranish JA, Nesvizhskii AI, Eddes JS, Mallick P, Eng J,
Desiere F, Flory M, Martin DB, Kim B, Lee H, Raught B, Aebersold R.
"Analysis of the S. cerevisiae proteome with PeptideAtlas.",
Genome Biol. 2006 Nov 13;7(11)
2006 Update
Frank Desiere, Eric W. Deutsch, Nichole L. King, Alexey I. Nesvizhskii,
Parag Mallick, Jimmy Eng, Sharon Chen, James Eddes, Sandra N. Loevenich, and Ruedi Aebersold:
"The PeptideAtlas Project",
Nucleic Acids Research, 2006, 34, D655-D658 -
[PDF]
Initial PeptideAtlas Publication
Frank Desiere, Eric W. Deutsch, Alexey I. Nesvizhskii, Parag Mallick, Nichole King, Jimmy K. Eng,
Alan Aderem, Rose Boyle, Erich Brunner, Samuel Donohoe, Nelson Fausto, Ernst Hafen, Lee Hood,
Michael G. Katze, Kathleen Kennedy, Floyd Kregenow, Hookeun Lee, Biaoyang Lin, Dan Martin,
Jeff Ranish, David J. Rawlings, Lawrence E. Samelson, Yuzuru Shiio, Julian Watts, Bernd Wollscheid,
Michael E. Wright, Wei Yan, Lihong Yang, Eugene Yi, Hui Zhang and Ruedi Aebersold:
"Integration of Peptide Sequences Obtained by High-Throughput Mass Spectrometry with
the Human Genome",
Genome Biology 2004, 6:R9 -
[PDF]
DATA PUBLICATIONS
The publications further describing datasets used in
the PeptideAtlas builds can be found on the
Raw Data Repository
page and on the Data Contributors page.
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