≡   PeptideAtlas Links Seattle Proteome Center

PeptideAtlas: Home Overview Contacts Data Contributors Publications Software Database Schema Feedback Funding FAQ
Atlas Data: Data Repository Human Plasma (Farrah, et al.) HPPP Data Central PeptideAtlas Builds Search Database
Contribute Data Genome Browser Setup

Related: SRMAtlas PASSEL SWATHAtlas
Spectral Libs: Libraries + Info SpectraST Search

Glossary/Terms: Atlas nomenclature Protein ID terms

Log In
Full 2021-06 Build Summary
94,831distinct peptides
2,750canonical proteins


The Human Plasma / Extracellular Vesicles PeptideAtlas provides a compendium of results from uniformly reprocessed mass spectrometry proteomics datasets.

Available Human Plasma / Extracellular Vesicles datasets were reprocessed from the raw files using the Trans-Proteomic Pipeline suite of tools.


SEARCH(e.g. Q9Y4H2)


A publication describing the Human Plasma / Extracellular Vesicles PeptideAtlas build is in progress. For now, please just reference this URL, and check back later for a citation.


Below are individual Human Plasma / Extracellular Vesicles PeptideAtlas builds available for download in various flat file formats. Note that not all files contain all information from the build. A build subtitled "PSM FDR=0.002" denotes a PSM FDR threshold of 0.002 (0.2%) is applied to every sample in the build.

Human Plasma EV 2021-06 PSM FDR = 0.001Latest Build
  • Biosequence Set in FASTA format [511MB]
  • Database tables exported as mysql dump file [65MB]
  • Peptide CDS and chromosomal coordinates [181MB]
  • Peptide CDS coordinates [105MB]
  • Peptide sequences in FASTA format [2MB]


Complete description of each of the available download formats

Other Resources