The SARS-CoV-2 PeptideAtlas provides a compendium of results from uniformly reprocessed mass spectrometry proteomics datasets.
Available SARS-CoV-2 datasets were reprocessed from the raw files using the Trans-Proteomic Pipeline suite of tools.
A publication describing the SARS-CoV-2 PeptideAtlas build is in progress. For now, please just reference this URL, and check back later for a citation.
Below are individual SARS-CoV-2 PeptideAtlas builds available for download in various flat file formats. Note that not all files contain all information from the build, nor are all file formats available for every build. Link names encode the PeptideProphet cutoff used when creating that build, for example a link named "PSM FDR=0.002" denotes a PSM FDR threshold 0.002 (0.2%) is applied to every sample in the build.
Complete description of each of the available download formats
We thank Amazon Web Services for computing time.