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Full 2026-04 Build Summary
30datasets
52experiments
1,701MS runs
12,366,110PSMs
846,783distinct peptides
12,216canonical proteins

About

The Zebrafish PeptideAtlas provides a compendium of results from uniformly reprocessed mass spectrometry proteomics datasets.

Available datasets of Zebrafish samples were reprocessed from the raw files using the Trans-Proteomic Pipeline suite of tools.

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Download

Below are individual Zebrafish PeptideAtlas builds available for download in various flat file formats. Note that not all files contain all information from the build. A build subtitled "PSM FDR=0.002" denotes a PSM FDR threshold of 0.002 (0.2%) is applied to every sample in the build.

Zebrafish 2026-04 PSM FDR = 0.001Latest Build
  • Biosequence Set in FASTA format [175MB]
  • Peptide CDS and chromosomal coordinates [288MB]
  • Peptide CDS coordinates [153MB]
  • Peptide sequences in FASTA format [10MB]
Zebrafish 2014-03 PSM FDR = 0.0035
  • Biosequence Set in FASTA format [139MB]
  • Database tables exported as an XML file [58MB]
  • Database tables exported as mysql dump file [33MB]
  • Peptide CDS and chromosomal coordinates [53MB]
  • Peptide CDS coordinates [26MB]
  • Peptide sequences in FASTA format [2MB]

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Complete description of each of the available download formats

PeptideAtlas
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