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Dataset Identifier

Metadata
datasetIdentifierPASS00338
datasetTypeSRM
submitterEustache Paramithiotis <eparamithiotis@caprion.com>
submitter_organization
lab_head_full_nameEustache Paramithiotis
lab_head_emaileparamithiotis@caprion.com
lab_head_organizationCaprion.com
lab_head_countryCanada
datasetTagVerifTb1
datasetTitleMRM verification of serum protein biomarkers differentially expressed in Active Tuberculosis in HIV- and HIV+ Individuals (All centers - part 1)
publicReleaseDate2014-03-01 00:00:00
finalizedDate2015-05-01 14:33:11
summaryThe overall goal of the project is to identify candidate biomarkers of Active infection with Mycobacterium tuberculosis (Mtb) in individuals with or without HIV. Samples were analyzed from two tuberculosis (TB) endemic countries, Brazil and South Africa (SA), as well as from the United States (US). The US site included patients that were in the early stages of Active TB, with mean symptom duration of 1.5 months. The subjects from the Brazil site had mean symptom duration of 6 months, and the SA site subjects had advanced TB. All sites also provided samples asymptomatic for TB or with Latent TB infection. The US and SA sites also had subjects with and without HIV co-infection, whereas the Brazilian subjects were all HIV-. This specific dataset corresponds to the Verification step of the study, for the all centers, Part 1.
contributorsEustache Paramithiotis
publicationUnpublished
growth
treatment
extraction
separation
digestionTrypsin
acquisition
informatics
instrumentsAB Sciex QTRAP 5500
speciesHuman
massModificationsNone

Official URL for this dataset: http://www.peptideatlas.org/PASS/PASS00338
To access files via FTP, use credentials:
Servername: ftp.peptideatlas.org
Username: PASS00338
Password: ZM2675i

Or use your browser's FTP mode: ftp://PASS00338:ZM2675i@ftp.peptideatlas.org/


Listing of files:

 2.4M Oct  7  2013 DataMZFX04I12102.wiff
 1.2M Oct  7  2013 DataMZFX04I12102.wiff.scan
 165M Oct  7  2013 DataMZFX31H12103.wiff
  80M Oct  7  2013 DataMZFX31H12103.wiff.scan
 4.8M Oct  7  2013 DataPQSST07H12102.wiff
 2.8M Oct  7  2013 DataPQSST07H12102.wiff.scan
 134M Oct  7  2013 DataPZFX07H12101.wiff
  61M Oct  7  2013 DataPZFX07H12101.wiff.scan
 1.3K Oct  7  2013 PASS00338_DESCRIPTION-2013-09-07_070647.txt
 1.3K Oct  7  2013 PASS00338_DESCRIPTION-2013-09-07_112356.txt
 1.3K May  1  2015 PASS00338_DESCRIPTION.txt
  52K Oct  7  2013 Q-ZFX_TransitionMAP_PASSEL.tsv
 565K May  1  2015 V-ZFX_Intensities_US.txt

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