≡   PeptideAtlas Links Seattle Proteome Center

PeptideAtlas: Home Overview Contacts Publications Software Database Schema Feedback Funding FAQ
Atlas Data: Data Repository HPPP Data Central PeptideAtlas Builds PeptideAtlas Exports THISP Search Database
Contribute Data

Related: SRMAtlas PASSEL SWATHAtlas
Spectral Libs: Libraries + Info SpectraST Search

Glossary/Terms: Atlas nomenclature Protein ID terms

LOG IN
MENU
Log In
Search All Builds Select Build Stats & Lists Peps & Prots for Default Builds Summarize Peptide View Ortholog Group Current Build Peptide Protein Queries Browse Peptides Browse Proteins Browse Core Proteome Browse PTM Summary Browse Protein By Experiment Compare Proteins in 2 Builds Search Proteins Pathways HPP Protein Lists SRMAtlas Query Transitions Transition Lists SRMAtlas Builds PASSEL Experiments PASSEL Data Submission SWATH/DIA Download Library Custom Library Assess Library Upload Library

View Dataset


Email address      Password

Dataset Identifier

Metadata
datasetIdentifierPASS00344
datasetTypeSRM
submitterEustache Paramithiotis <eparamithiotis@caprion.com>
submitter_organization
lab_head_full_nameEustache Paramithiotis
lab_head_emaileparamithiotis@caprion.com
lab_head_organizationCaprion.com
lab_head_countryCanada
datasetTagVerifTbProg
datasetTitleMRM verification of plasma/serum protein biomarkers for progression from Mycobacterium tuberculosis infection to disease
publicReleaseDate2014-03-01 00:00:00
finalizedDate2013-10-21 07:32:56
summaryThe overall scope of this study is to find early tuberculosis (TB) candidate protein biomarkers in different TB study groups vs. controls. The identified biomarkers may become the basis of a rapid diagnostic test able to identify active TB earlier than current practice. In addition, the candidate biomarkers may predict which patients are likely to convert from latent infection to active disease. . This project uses plasma and serum samples collected in a long-standing TB household contact study, the Kawempe Community Health Study, conducted in Kampala, Uganda, a TB endemic area. The study utilizes samples from TB index cases and household contacts that were negative for TB at recruitment. A subset of these contacts developed Mtb infection (i.e., their Tuberculin Skin Test (TST) converted to positive) after 3-6 months, and smaller subset developed active TB after 3 months of follow-up. Control patients were still TST negative at 12 months or 24 months of follow-up. This dataset corresponds to the verification phase of the study.
contributorsEustache Paramithiotis
publicationUnpublished
growth
treatment
extraction
separation
digestionTrypsin
acquisition
informatics
instrumentsAB Sciex QTRAP 5500
speciesHuman
massModificationsNone

Official URL for this dataset: http://www.peptideatlas.org/PASS/PASS00344
To access files via FTP, use credentials:
Servername: ftp.peptideatlas.org
Username: PASS00344
Password: XI8882jn

Or use your browser's FTP mode: ftp://PASS00344:XI8882jn@ftp.peptideatlas.org/


Listing of files:

 150M Oct 21  2013 DataPZHS05G13102.wiff
 121M Oct 21  2013 DataPZHS05G13102.wiff.scan
  97M Oct 21  2013 DataPZHS09G13101.wiff
  80M Oct 21  2013 DataPZHS09G13101.wiff.scan
 1.5K Oct 21  2013 PASS00344_DESCRIPTION.txt
  94K Oct 21  2013 ZHS_TransitionMAP.txt

Browse FTP upload area