≡   PeptideAtlas Links Seattle Proteome Center

PeptideAtlas: Home Overview Contacts Publications Software Database Schema Feedback Funding FAQ
Atlas Data: Data Repository HPPP Data Central PeptideAtlas Builds PeptideAtlas Exports THISP Search Database
Contribute Data

Related: SRMAtlas PASSEL SWATHAtlas
Spectral Libs: Libraries + Info SpectraST Search

Glossary/Terms: Atlas nomenclature Protein ID terms

LOG IN
MENU
Log In
Search All Builds Select Build Stats & Lists Peps & Prots for Default Builds Summarize Peptide View Ortholog Group Current Build Peptide Protein Queries Browse Peptides Browse Proteins Browse Core Proteome Browse PTM Summary Browse Protein By Experiment Compare Proteins in 2 Builds Search Proteins Pathways HPP Protein Lists SRMAtlas Query Transitions Transition Lists SRMAtlas Builds PASSEL Experiments PASSEL Data Submission SWATH/DIA Download Library Custom Library Assess Library Upload Library

View Dataset


Email address      Password

Dataset Identifier

Metadata
datasetIdentifierPASS01646
datasetTypeSRM
submitterBing Yao <njcellbio@163.com>
submitter_organizationNanjing University
lab_head_full_nameQuan Zhao
lab_head_emailnjcellbio@163.com
lab_head_organizationNanjing University
lab_head_countryChina
datasetTagH4R3me2a
datasetTitlePRMT1-mediated H4R3me2a recruits SMARCA4 to promote colorectal cancer progression by enhancing EGFR signaling
publicReleaseDate2021-02-18 00:00:00
finalizedDate2021-02-17 09:01:34
summaryHigh capacity streptavidin agarose (Thermo Scientific) was incubated with C-terminal
biotin-tagged 20 amino acid N-terminal peptides of H4, H4R3me2a, and H4R3me2s
peptide immunoprecipitates from nuclear extracts of HCT116 cells, separated by
sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE), and
stained with SimplyBlue Safestain (Invitrogen). Protein bands of interest were excised
and subjected to electrospray–ion trap tandem mass spectrometry (LCQ-Deca,
Finnigan)
contributorsBing Yao,et, al.
publicationBing Yao1, †, Tao Gui1, †, Xiangwei Zeng1, Yexuan Deng1, Zhi Wang1, Ying Wang1,Dongjun Yang1, Qixiang Li1, Peipei Xu1, Ruifeng Hu1, Xinyu Li1, Bing Chen1,Jing Wang1, Ke Zen1, Haitao Li2, Melissa J. Davis3, Marco J. Herold3, Hua-Feng Pan4,Zhi-Wei Jiang4, David C. S. Huang3, Ming Liu1*, Junyi Ju1*and Quan Zhao1*.Genome Medicine.submitted.
growth
treatment
extraction
separation
digestion
acquisition
informatics
instrumentsProtein bands of interest were excised and subjected to electrospray–ion trap tandem mass spectrometry (LCQ-Deca, Finnigan).
speciesHuman
massModificationsNone

Official URL for this dataset: http://www.peptideatlas.org/PASS/PASS01646
To access files via FTP, use credentials:
Servername: ftp.peptideatlas.org
Username: PASS01646
Password: asd2007200

Or use your browser's FTP mode: ftp://PASS01646:asd2007200@ftp.peptideatlas.org/


Listing of files:

 1.4K Feb 17  2021 PASS01646_DESCRIPTION.txt
  32M Feb 17  2021 Protein ID_YB_ctrl_20180511.mzML

Browse FTP upload area