1	dataset
80	experiments
2,201	MS runs
4,060,089	PSMs
34,388	distinct peptides
3,153	canonical proteins

About

The Honey Bee PeptideAtlas provides a compendium of results from uniformly reprocessed mass spectrometry proteomics datasets.

Available datasets of Honey Bee samples were reprocessed from the raw files using the Trans-Proteomic Pipeline suite of tools.

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All detected canonical proteins

Publications

A honey bee (Apis mellifera L.) PeptideAtlas crossing castes and tissues
Chan QW, Parker R, Sun Z, Deutsch EW, Foster LJ.
BMC Genomics. 2011 Jun 3;12:290
DOI : 10.1186/1471-2164-12-290. PMID: 21639908; PMCID: PMC3213019.

Download

Below are individual Honey Bee PeptideAtlas builds available for download in various flat file formats. Note that not all files contain all information from the build. A build subtitled "PSM FDR=0.002" denotes a PSM FDR threshold of 0.002 (0.2%) is applied to every sample in the build.

HoneyBee 2013-09 PSM FDR = 0.00004Latest Build

Biosequence Set in FASTA format [6MB]
Database tables exported as an XML file [24MB]
Database tables exported as mysql dump file [13MB]
Peptide CDS and chromosomal coordinates [3MB]
Peptide CDS coordinates [1MB]
Peptide sequences in FASTA format [965KB]

HoneyBee 2010-03 PSM FDR = 0.0007

Biosequence Set in FASTA format [34MB]
Database tables exported as an XML file [86MB]
Database tables exported as mysql dump file [49MB]
Peptide CDS and chromosomal coordinates [7MB]
Peptide CDS coordinates [4MB]
Peptide sequences in FASTA format [763KB]

Help

Complete description of each of the available download formats