Human PeptideAtlas Builds Download


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Below are individual Human PeptideAtlas builds available for download in various flat file formats. Note that not all files contain all information from the build, nor are all file formats available for every build. A complete description of each of the available download formats is available. Link names encode the PeptideProphet cutoff used when creating that build, for example a link named "P≥0.9" denotes a build in which only peptides where P≥0.9 are included.

CURRENT BUILD: Human 201005

Peptide sequences in FASTA format:
PSM FDR = 0.0003

Biosequence Set in FASTA format:
PSM FDR = 0.0003

Peptide CDS coordinates:
PSM FDR = 0.0003

Database tables exported as an XML file:
PSM FDR = 0.0003

Database tables exported as mysql dump file:
PSM FDR = 0.0003

Peptide CDS and chromosomal coordinates:
PSM FDR = 0.0003

OLD BUILDS: Human 200903

Peptide sequences in FASTA format:
P >= 0.9

Biosequence Set in FASTA format:
P >= 0.9

Peptide CDS coordinates:
P >= 0.9

Database tables exported as an XML file:
P >= 0.9

Database tables exported as mysql dump file:
P >= 0.9

Peptide CDS and chromosomal coordinates:
P >= 0.9

OLD BUILDS: Human April 2007 build

Peptide sequences in FASTA format: P ≥ 0.9

Peptide CDS coordinates: P ≥ 0.9

Peptide CDS and chromosomal coordinates: P ≥ 0.9

Database tables exported as an XML file: P ≥0.9

Database tables exported as mysql dump file: P ≥0.9

OLDER BUILDS

Human July 2006 build

Peptide sequences in FASTA format: P ≥ 0.9

Peptide CDS coordinates: P ≥ 0.9

Peptide CDS and chromosomal coordinates: P ≥ 0.9

Database tables exported as an XML file: P ≥0.9

Database tables exported as mysql dump file: P ≥0.9

Human April 2005 build

Peptide sequences in FASTA format: P ≥ 0.7, P ≥ 0.9,

Peptide CDS coordinates: P ≥ 0.7, P ≥ 0.9,

Peptide CDS and chromosomal coordinates: P ≥ 0.7, P ≥ 0.9,

Human July 2004 build (published as Desiere et al. 2004 in Genome Biology)

Peptide sequences in FASTA format: P ≥ 0.7, P ≥ 0.9, P ≥ 0.95, P ≥ 0.99

Peptide CDS coordinates: P ≥ 0.7, P ≥ 0.9, P ≥ 0.95, P ≥ 0.99

Peptide CDS and chromosomal coordinates: P ≥ 0.7, P ≥ 0.9, P ≥ 0.95, P ≥ 0.99

Human April 2004 build

Peptide sequences in FASTA format: P ≥ 0.7, P ≥ 0.9, P ≥ 0.95, P ≥ 0.99

Peptide CDS coordinates: P ≥ 0.7, P ≥ 0.9, P ≥ 0.95, P ≥ 0.99

Peptide CDS and chromosomal coordinates: P ≥ 0.7, P ≥ 0.9, P ≥ 0.95, P ≥ 0.99