Below are individual Human PeptideAtlas builds available for download in various flat file formats. Note that not all files contain all information from the build. A link named "PSM FDR" denotes the PSM FDR value used in the build.

Peptide sequences in FASTA format:
PSM FDR = 0.0035

Biosequence Set in FASTA format:
PSM FDR = 0.0035

Peptide CDS coordinates:
PSM FDR = 0.0035

Database tables exported as an XML file:
PSM FDR = 0.0035

Database tables exported as mysql dump file:
PSM FDR = 0.0035

Peptide CDS and chromosomal coordinates:
PSM FDR = 0.0035