PeptideAtlas
PeptideAtlas Home
 Seattle Proteome
 Center

  
PeptideAtlas:
  Overview
  Contacts
  Data Contributors
  Publications
  Software
  Database Schema
  Feedback
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Atlas Data:
  Data Repository
  Human Plasma
(Farrah, et al.)

  HPPP Data Central
  PeptideAtlas Builds
  Search Database
  

  Contribute Data
  Genome Browser
Setup


Related:
  SRMAtlas
  PASSEL
  Phosphopep
  Unipep
  mspecLINE

Spectral Libs:
  Libraries + Info
  SpectraST Search


Glossary/Terms:
  Atlas nomenclature
  SGD nomenclature
  Protein ID terms

  
  LOGIN

Resources available for Download

  • mzXML_format - gzipped tar archive of experiment's spectra in mzXML format.
  • [RAW,dat,raw]_format - gzipped tar archive of experiment's spectra in instrument vendor format.
  • Search_Results - SEQUEST search results in gzipped tar archives, summary html files from SEQUEST search results, PeptideProphet and ProteinProphet output in pepXML and protXML, and the sequest.params file.
  • ProteinProphet - ProteinProphet output in protXML formats.
  • sequest_params - parameter file used in the SEQUEST search.
  • qualscore_results - list of high quality unidentified (unassigned) spectra! Please see Nesvizhskii et al. (2006) for details.
  • README - text file holding sample information and file listings
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