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Submission of MRM/SRM transitions to the Peptide Atlas database
Thank you for your interest in contributing MRM Transitions to the MRM Atlas
and Peptide Atlas. We accept user-validated transitions acquired on triple
quadrupole instruments for any of the organisms for which there are public
peptide atlas' available, currently: Mouse, Human, Yeast, Halobacterium,
Drosophila, and Streptococcus pyogenes. A basic description of MRM assays
can be found here . A glossary
of MRM-related terms can be found here .
Sets of transitions can be uploaded
at this page . You must first download a template file in excel or tsv format.
The table below provides a description of each of the fields in the submission
form.
| modified_peptide_sequence | Sequence of the peptide including any modifications in standard notation, e.g. THC[160]AAHR |
| peptide_charge | Charge on the precursor ion |
| q1_mz | parent mass to charge ratio: q1 |
| q3_mz | product ion mass to charge ratio: q3 |
| q3_ion_label | Label for the product ion (e.g. y1-7, b2-6, etc.) |
| transition_suitability_level_id | User-specified quality metric. Permissible values are Best, OK, and No, all others will be stored as 'OK' |
| publication_id | Article title of publication related to this entry, if any |
| annotator_name | Name of person uploading transitions |
| collision_energy | Collision energy setting used during validation run, or best CE setting if multiple runs were performed |
| retention_time | Retention time (in minutes) of parent peptide |
| instrument | Instrument used for analysis of transition pair |
| comment | Any additional comments or information you wish to provide |
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© 2004-2012, Institute for Systems Biology. All Rights Reserved
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